miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20607 5' -55.5 NC_004688.1 + 58754 0.66 0.890092
Target:  5'- cCCCCAgcUgACCgauuGGCCUGGuGGUgcccgGGCa -3'
miRNA:   3'- -GGGGU--AgUGG----CCGGACCuUCAa----CUGc -5'
20607 5' -55.5 NC_004688.1 + 43065 0.66 0.890092
Target:  5'- gCUCCAUCACUGcGagCUGGGcguGUUGACc -3'
miRNA:   3'- -GGGGUAGUGGC-Cg-GACCUu--CAACUGc -5'
20607 5' -55.5 NC_004688.1 + 77320 0.66 0.875934
Target:  5'- uUCCCGggcUgACCGGCCUGaccGUUGAUa -3'
miRNA:   3'- -GGGGU---AgUGGCCGGACcuuCAACUGc -5'
20607 5' -55.5 NC_004688.1 + 97334 0.66 0.868517
Target:  5'- gCCCCG-CACCuccggauaGGCCUGcgcgacGucGUUGACGg -3'
miRNA:   3'- -GGGGUaGUGG--------CCGGAC------CuuCAACUGC- -5'
20607 5' -55.5 NC_004688.1 + 68838 0.67 0.851438
Target:  5'- cCCCCAggugcucgacgaaUguCCGGCCUGGGcggcggggucgccGGUccgGACGu -3'
miRNA:   3'- -GGGGU-------------AguGGCCGGACCU-------------UCAa--CUGC- -5'
20607 5' -55.5 NC_004688.1 + 83321 0.67 0.82828
Target:  5'- gUCCAgcgggC-CCGGCCggggaucaGGAAGUUGACc -3'
miRNA:   3'- gGGGUa----GuGGCCGGa-------CCUUCAACUGc -5'
20607 5' -55.5 NC_004688.1 + 27519 0.67 0.823125
Target:  5'- uCCUCGUCGauauccacccggggaGGCCUGGAGGagucggucaccuccUUGACGg -3'
miRNA:   3'- -GGGGUAGUgg-------------CCGGACCUUC--------------AACUGC- -5'
20607 5' -55.5 NC_004688.1 + 46935 0.68 0.792751
Target:  5'- cCCCCA-CACUGGCCgGGGAccgccucGGCGg -3'
miRNA:   3'- -GGGGUaGUGGCCGGaCCUUcaa----CUGC- -5'
20607 5' -55.5 NC_004688.1 + 91981 0.69 0.764509
Target:  5'- gCCUuguaAUCGCCGGUCUGGuacGGgugUGGCa -3'
miRNA:   3'- gGGG----UAGUGGCCGGACCu--UCa--ACUGc -5'
20607 5' -55.5 NC_004688.1 + 65067 0.69 0.764509
Target:  5'- gCCCCuugcaccugCACCGGCUgcUGGgcGUguauUGGCGa -3'
miRNA:   3'- -GGGGua-------GUGGCCGG--ACCuuCA----ACUGC- -5'
20607 5' -55.5 NC_004688.1 + 12191 0.69 0.76162
Target:  5'- aUCCCAUCGCCuacgcgccccgagaGGUCUGGAcg--GACGc -3'
miRNA:   3'- -GGGGUAGUGG--------------CCGGACCUucaaCUGC- -5'
20607 5' -55.5 NC_004688.1 + 94521 0.7 0.70502
Target:  5'- aCCCCgacGUCACCGacGUCUGGGAaUUGGCc -3'
miRNA:   3'- -GGGG---UAGUGGC--CGGACCUUcAACUGc -5'
20607 5' -55.5 NC_004688.1 + 63270 0.75 0.390352
Target:  5'- gCCCGUCACCaccucGGCCUGGAaucGGUaccucGACGa -3'
miRNA:   3'- gGGGUAGUGG-----CCGGACCU---UCAa----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.