miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2061 3' -55 NC_001348.1 + 107637 0.66 0.919285
Target:  5'- aCGaGGCCUCAacGGAACC-CGUG-CCGc -3'
miRNA:   3'- gGCaCCGGGGU--UCUUGGuGUACaGGU- -5'
2061 3' -55 NC_001348.1 + 122155 0.66 0.919285
Target:  5'- aCGaGGCCUCAacGGAACC-CGUG-CCGc -3'
miRNA:   3'- gGCaCCGGGGU--UCUUGGuGUACaGGU- -5'
2061 3' -55 NC_001348.1 + 84873 0.66 0.900953
Target:  5'- aCGUccacacaGCCUCAGGAGCCGC--GUCCGg -3'
miRNA:   3'- gGCAc------CGGGGUUCUUGGUGuaCAGGU- -5'
2061 3' -55 NC_001348.1 + 106154 0.66 0.900953
Target:  5'- cCUG-GGCCaCCucucGAGGGCCACcgcGUCCAa -3'
miRNA:   3'- -GGCaCCGG-GG----UUCUUGGUGua-CAGGU- -5'
2061 3' -55 NC_001348.1 + 123638 0.66 0.900953
Target:  5'- cCUG-GGCCaCCucucGAGGGCCACcgcGUCCAa -3'
miRNA:   3'- -GGCaCCGG-GG----UUCUUGGUGua-CAGGU- -5'
2061 3' -55 NC_001348.1 + 8123 0.66 0.894358
Target:  5'- uCCGUGGUCgUCAGGAGCUaacaucauuAUAUGcCCAu -3'
miRNA:   3'- -GGCACCGG-GGUUCUUGG---------UGUACaGGU- -5'
2061 3' -55 NC_001348.1 + 57130 0.67 0.886133
Target:  5'- aCCGccaacaGGCUCCAcaaucguacgauuAGAACCaacucggACAUGUCCGg -3'
miRNA:   3'- -GGCa-----CCGGGGU-------------UCUUGG-------UGUACAGGU- -5'
2061 3' -55 NC_001348.1 + 124423 0.67 0.880463
Target:  5'- uCgGUGGCCCCGGGuguGCUGCGaGaCCGc -3'
miRNA:   3'- -GgCACCGGGGUUCu--UGGUGUaCaGGU- -5'
2061 3' -55 NC_001348.1 + 105369 0.67 0.880463
Target:  5'- uCgGUGGCCCCGGGuguGCUGCGaGaCCGc -3'
miRNA:   3'- -GgCACCGGGGUUCu--UGGUGUaCaGGU- -5'
2061 3' -55 NC_001348.1 + 29162 0.67 0.873171
Target:  5'- gUGUGGgaaguCCCCGAaAAUCGCcgGUCCAu -3'
miRNA:   3'- gGCACC-----GGGGUUcUUGGUGuaCAGGU- -5'
2061 3' -55 NC_001348.1 + 42638 0.67 0.865656
Target:  5'- cCCGcGG-CCCAAGGcguGCCACA-GUCUAc -3'
miRNA:   3'- -GGCaCCgGGGUUCU---UGGUGUaCAGGU- -5'
2061 3' -55 NC_001348.1 + 71367 0.67 0.857924
Target:  5'- cCCuUGGCCCaauaAAGGAUacCGUGUCCAc -3'
miRNA:   3'- -GGcACCGGGg---UUCUUGguGUACAGGU- -5'
2061 3' -55 NC_001348.1 + 70053 0.68 0.807356
Target:  5'- aCCG-GGuccgaCCCCGcGAACaACAUGUCCAa -3'
miRNA:   3'- -GGCaCC-----GGGGUuCUUGgUGUACAGGU- -5'
2061 3' -55 NC_001348.1 + 106033 0.73 0.545982
Target:  5'- cCCGcgcgGGCCCCAAGAcCCGC--GUCCc -3'
miRNA:   3'- -GGCa---CCGGGGUUCUuGGUGuaCAGGu -5'
2061 3' -55 NC_001348.1 + 123758 0.73 0.545982
Target:  5'- cCCGcgcgGGCCCCAAGAcCCGC--GUCCc -3'
miRNA:   3'- -GGCa---CCGGGGUUCUuGGUGuaCAGGu -5'
2061 3' -55 NC_001348.1 + 59192 1.11 0.002266
Target:  5'- cCCGUGGCCCCAAGAACCACAUGUCCAa -3'
miRNA:   3'- -GGCACCGGGGUUCUUGGUGUACAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.