miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2061 5' -52.8 NC_001348.1 + 336 0.66 0.953752
Target:  5'- gCGgGGUCCCAGGUCggcgGGAGuaguGCa -3'
miRNA:   3'- -GCgCCAGGGUUCAGgga-CCUUuu--UGa -5'
2061 5' -52.8 NC_001348.1 + 82518 0.67 0.924692
Target:  5'- aCGCGG-CaaGGGUCUCUGGGAAAcGCa -3'
miRNA:   3'- -GCGCCaGggUUCAGGGACCUUUU-UGa -5'
2061 5' -52.8 NC_001348.1 + 22599 0.68 0.912969
Target:  5'- --gGGUUCCugcaGGGUCCaCUGGAGGAGCc -3'
miRNA:   3'- gcgCCAGGG----UUCAGG-GACCUUUUUGa -5'
2061 5' -52.8 NC_001348.1 + 121899 0.7 0.822429
Target:  5'- aGCGGUCCCGA-UCCgaGGAuucguAAGACc -3'
miRNA:   3'- gCGCCAGGGUUcAGGgaCCU-----UUUUGa -5'
2061 5' -52.8 NC_001348.1 + 107893 0.7 0.822429
Target:  5'- aGCGGUCCCGA-UCCgaGGAuucguAAGACc -3'
miRNA:   3'- gCGCCAGGGUUcAGGgaCCU-----UUUUGa -5'
2061 5' -52.8 NC_001348.1 + 59155 1.09 0.004719
Target:  5'- cCGCGGUCCCAAGUCCCUGGAAAAACUg -3'
miRNA:   3'- -GCGCCAGGGUUCAGGGACCUUUUUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.