miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20611 3' -53 NC_004688.1 + 92113 0.66 0.952357
Target:  5'- -aGAUCC-CGACUACUGCugacGCCa--- -3'
miRNA:   3'- gaCUAGGcGCUGAUGGCGu---UGGaucu -5'
20611 3' -53 NC_004688.1 + 66517 0.66 0.943457
Target:  5'- -gGGUUCGgcacCGACcgggGCCGCAGCgUAGAg -3'
miRNA:   3'- gaCUAGGC----GCUGa---UGGCGUUGgAUCU- -5'
20611 3' -53 NC_004688.1 + 77859 0.66 0.938626
Target:  5'- gUGAUCCcCGAaagGCCGUAGCCg--- -3'
miRNA:   3'- gACUAGGcGCUga-UGGCGUUGGaucu -5'
20611 3' -53 NC_004688.1 + 64773 0.66 0.933538
Target:  5'- -cGAUCCGCGGCU-CgGCAAa-UGGGu -3'
miRNA:   3'- gaCUAGGCGCUGAuGgCGUUggAUCU- -5'
20611 3' -53 NC_004688.1 + 19522 0.67 0.910601
Target:  5'- -cGAUCUGCuuGCUGCCGCGGCgCcAGGc -3'
miRNA:   3'- gaCUAGGCGc-UGAUGGCGUUG-GaUCU- -5'
20611 3' -53 NC_004688.1 + 13597 0.67 0.904224
Target:  5'- --cGUCUGCGGCgagaaaGCCGUGAuCCUGGAg -3'
miRNA:   3'- gacUAGGCGCUGa-----UGGCGUU-GGAUCU- -5'
20611 3' -53 NC_004688.1 + 18824 0.68 0.883585
Target:  5'- -aGAUCCGCGcCggggGCCGCcccauGCCUGa- -3'
miRNA:   3'- gaCUAGGCGCuGa---UGGCGu----UGGAUcu -5'
20611 3' -53 NC_004688.1 + 102336 0.69 0.835101
Target:  5'- gUGAUCCGUGACgucaaccgGCCGCAcucggcgGgUUAGAg -3'
miRNA:   3'- gACUAGGCGCUGa-------UGGCGU-------UgGAUCU- -5'
20611 3' -53 NC_004688.1 + 58300 0.7 0.790708
Target:  5'- gCUGAUCUGCucGCUGCCGCugaugcuGCCgagggGGAa -3'
miRNA:   3'- -GACUAGGCGc-UGAUGGCGu------UGGa----UCU- -5'
20611 3' -53 NC_004688.1 + 101026 0.71 0.741598
Target:  5'- ----cCCGCGGCUGCCGUAGCUa--- -3'
miRNA:   3'- gacuaGGCGCUGAUGGCGUUGGaucu -5'
20611 3' -53 NC_004688.1 + 2758 0.74 0.552287
Target:  5'- -aGGUCUG-GACUACCGCGACgaGGAu -3'
miRNA:   3'- gaCUAGGCgCUGAUGGCGUUGgaUCU- -5'
20611 3' -53 NC_004688.1 + 26640 0.75 0.541901
Target:  5'- uUGGcCUGCGGCUGCCGCuuCaCUGGAa -3'
miRNA:   3'- gACUaGGCGCUGAUGGCGuuG-GAUCU- -5'
20611 3' -53 NC_004688.1 + 100214 0.76 0.481171
Target:  5'- -cGGUCagCGCGGCguuguCCGCGGCCUGGAu -3'
miRNA:   3'- gaCUAG--GCGCUGau---GGCGUUGGAUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.