miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20611 5' -61.4 NC_004688.1 + 60955 0.66 0.598702
Target:  5'- cGCACGACUguUGGCacggGGCCUauaGCGGg- -3'
miRNA:   3'- aCGUGUUGG--ACCGg---CUGGGg--CGCCag -5'
20611 5' -61.4 NC_004688.1 + 52060 0.66 0.598702
Target:  5'- gGCGCcggGGCCaucGCC-ACCaCCGCGGUCu -3'
miRNA:   3'- aCGUG---UUGGac-CGGcUGG-GGCGCCAG- -5'
20611 5' -61.4 NC_004688.1 + 52715 0.66 0.597693
Target:  5'- aGCACGACC-GGUCGagaacagccauccGCaCCUGCGGg- -3'
miRNA:   3'- aCGUGUUGGaCCGGC-------------UG-GGGCGCCag -5'
20611 5' -61.4 NC_004688.1 + 29960 0.66 0.585615
Target:  5'- aGUGCc-CCaGGCCGAugaccgucccgucaCCCCGgCGGUCg -3'
miRNA:   3'- aCGUGuuGGaCCGGCU--------------GGGGC-GCCAG- -5'
20611 5' -61.4 NC_004688.1 + 101813 0.66 0.578591
Target:  5'- aGCGCA----GGCCGACgCUgGUGGUCg -3'
miRNA:   3'- aCGUGUuggaCCGGCUG-GGgCGCCAG- -5'
20611 5' -61.4 NC_004688.1 + 79935 0.66 0.577589
Target:  5'- uUGgACGGCa-GGCCGGgCCCGCccggaucgaccggGGUCa -3'
miRNA:   3'- -ACgUGUUGgaCCGGCUgGGGCG-------------CCAG- -5'
20611 5' -61.4 NC_004688.1 + 100728 0.66 0.548721
Target:  5'- cGCGCu-CUUGGCgCGgaACUCgGCGGUCu -3'
miRNA:   3'- aCGUGuuGGACCG-GC--UGGGgCGCCAG- -5'
20611 5' -61.4 NC_004688.1 + 26467 0.67 0.529076
Target:  5'- gGCGCAggcaggggACCcGGCCGACgcgaaugcugguCCCGUGGa- -3'
miRNA:   3'- aCGUGU--------UGGaCCGGCUG------------GGGCGCCag -5'
20611 5' -61.4 NC_004688.1 + 93196 0.67 0.509696
Target:  5'- gGCGCgGGCCgcuuggcgGGCCGaACCUCGUGGcCc -3'
miRNA:   3'- aCGUG-UUGGa-------CCGGC-UGGGGCGCCaG- -5'
20611 5' -61.4 NC_004688.1 + 25614 0.67 0.499164
Target:  5'- aGCGCcGCCUGGugcucuuucuccuCCGcCUCCGCGG-Cg -3'
miRNA:   3'- aCGUGuUGGACC-------------GGCuGGGGCGCCaG- -5'
20611 5' -61.4 NC_004688.1 + 87470 0.67 0.490619
Target:  5'- aUGCuCGAaaUGGCCuucugcGACCCUGgGGUCa -3'
miRNA:   3'- -ACGuGUUggACCGG------CUGGGGCgCCAG- -5'
20611 5' -61.4 NC_004688.1 + 37350 0.68 0.484961
Target:  5'- cGCAC-GCCUGcgagccuuggugcacGCCGcGCCCUGCGG-Cg -3'
miRNA:   3'- aCGUGuUGGAC---------------CGGC-UGGGGCGCCaG- -5'
20611 5' -61.4 NC_004688.1 + 14034 0.68 0.453512
Target:  5'- aGCAC-ACCaGGUCGGCguucugCCCGUGGUUc -3'
miRNA:   3'- aCGUGuUGGaCCGGCUG------GGGCGCCAG- -5'
20611 5' -61.4 NC_004688.1 + 69168 0.68 0.453512
Target:  5'- gGCGCGACCguuggucacgaGGCCcuugGAgCCCGCGGa- -3'
miRNA:   3'- aCGUGUUGGa----------CCGG----CUgGGGCGCCag -5'
20611 5' -61.4 NC_004688.1 + 37266 0.68 0.453512
Target:  5'- gGUGgGAUCgaugcggGGCCGGgCCCGCgGGUCa -3'
miRNA:   3'- aCGUgUUGGa------CCGGCUgGGGCG-CCAG- -5'
20611 5' -61.4 NC_004688.1 + 100170 0.68 0.434651
Target:  5'- cUGCACGaaGCCguccgucaGGUCGACCUCaugggcgcuggggGCGGUCa -3'
miRNA:   3'- -ACGUGU--UGGa-------CCGGCUGGGG-------------CGCCAG- -5'
20611 5' -61.4 NC_004688.1 + 68515 0.69 0.409369
Target:  5'- gGCGuCGACCgacuuGCCGGCCacgagggCGCGGUCg -3'
miRNA:   3'- aCGU-GUUGGac---CGGCUGGg------GCGCCAG- -5'
20611 5' -61.4 NC_004688.1 + 90546 0.69 0.392476
Target:  5'- aGCcguCGuuGCCgaGGCCGACCgCGgGGUCg -3'
miRNA:   3'- aCGu--GU--UGGa-CCGGCUGGgGCgCCAG- -5'
20611 5' -61.4 NC_004688.1 + 101420 0.7 0.376043
Target:  5'- uUGCGCAugCccucggGGCCGGUCUCGCGGa- -3'
miRNA:   3'- -ACGUGUugGa-----CCGGCUGGGGCGCCag -5'
20611 5' -61.4 NC_004688.1 + 88 0.7 0.344598
Target:  5'- uUGcCACAGCUcGGCCGGCggcccuuugaCCUGCGGUUu -3'
miRNA:   3'- -AC-GUGUUGGaCCGGCUG----------GGGCGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.