miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20612 3' -58.4 NC_004688.1 + 33256 0.66 0.777813
Target:  5'- cGCCaCGGCgaggaguuugcggaUCUGCUcggcagauuCCUCGGcCGCCa -3'
miRNA:   3'- -CGGaGCCGa-------------AGAUGGu--------GGAGCC-GCGG- -5'
20612 3' -58.4 NC_004688.1 + 47867 0.66 0.77409
Target:  5'- gGCaC-CGGCga-UGCCGauguggaaguCCUCGGCGCg -3'
miRNA:   3'- -CG-GaGCCGaagAUGGU----------GGAGCCGCGg -5'
20612 3' -58.4 NC_004688.1 + 22978 0.66 0.77409
Target:  5'- uUUUCGGCcacgucgcgCUGCCGCCgaaGCGCCu -3'
miRNA:   3'- cGGAGCCGaa-------GAUGGUGGagcCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 98762 0.66 0.768468
Target:  5'- cGCCggcggaugacggUGGCUUCgcggguuugaGCCUCGGUGUCg -3'
miRNA:   3'- -CGGa-----------GCCGAAGaugg------UGGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 7203 0.66 0.755185
Target:  5'- gGCCggCGGC-UCUGCCGagCUCGuggugaGCGUCa -3'
miRNA:   3'- -CGGa-GCCGaAGAUGGUg-GAGC------CGCGG- -5'
20612 3' -58.4 NC_004688.1 + 97373 0.66 0.755185
Target:  5'- gGCCUCGGCgauuucaUCcAUCACCgUCGGUcucucgcgGCUg -3'
miRNA:   3'- -CGGAGCCGa------AGaUGGUGG-AGCCG--------CGG- -5'
20612 3' -58.4 NC_004688.1 + 31399 0.66 0.745566
Target:  5'- gGUCUCGGCUgauagGCCACCcgcucCGGCa-- -3'
miRNA:   3'- -CGGAGCCGAaga--UGGUGGa----GCCGcgg -5'
20612 3' -58.4 NC_004688.1 + 22794 0.66 0.735847
Target:  5'- cCCUUGGCga--GCCA-CUCGGCGgCa -3'
miRNA:   3'- cGGAGCCGaagaUGGUgGAGCCGCgG- -5'
20612 3' -58.4 NC_004688.1 + 60636 0.66 0.735847
Target:  5'- -aCUCGGCcUCgcugagugcACCGCCgacuggcCGGUGCCc -3'
miRNA:   3'- cgGAGCCGaAGa--------UGGUGGa------GCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 31335 0.66 0.735847
Target:  5'- gGCgCUCGGCc---GCCGCCUUuugcgcggGGCGCg -3'
miRNA:   3'- -CG-GAGCCGaagaUGGUGGAG--------CCGCGg -5'
20612 3' -58.4 NC_004688.1 + 79227 0.66 0.73487
Target:  5'- -gCUCGGCcgaggUCUugGgCGCCUCccccgugguggggGGCGCCg -3'
miRNA:   3'- cgGAGCCGa----AGA--UgGUGGAG-------------CCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 33570 0.66 0.729972
Target:  5'- cGCCUUGGCUaucucgaccuguccgUCgaucuCCugCUUGcGCGCg -3'
miRNA:   3'- -CGGAGCCGA---------------AGau---GGugGAGC-CGCGg -5'
20612 3' -58.4 NC_004688.1 + 39585 0.66 0.726039
Target:  5'- uGUCUCGGUUg--ACgACgaCGGCGUCg -3'
miRNA:   3'- -CGGAGCCGAagaUGgUGgaGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 71197 0.67 0.71615
Target:  5'- uUCUCGGgcCUUCgccCCGCCgggCGGUGUCu -3'
miRNA:   3'- cGGAGCC--GAAGau-GGUGGa--GCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 93888 0.67 0.712174
Target:  5'- gGCCgCGGUgcgggcgaugacgUCgGCCugUUCGGgGCCg -3'
miRNA:   3'- -CGGaGCCGa------------AGaUGGugGAGCCgCGG- -5'
20612 3' -58.4 NC_004688.1 + 89121 0.67 0.710182
Target:  5'- cCCUCGGaaauaccauCCACCUCGGaaccgcgucCGCCa -3'
miRNA:   3'- cGGAGCCgaagau---GGUGGAGCC---------GCGG- -5'
20612 3' -58.4 NC_004688.1 + 57296 0.67 0.696167
Target:  5'- uUCUUGGUgcgCUGCCugCccgCGGUGUCg -3'
miRNA:   3'- cGGAGCCGaa-GAUGGugGa--GCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 63908 0.67 0.690127
Target:  5'- aCCggUGGCcagcaagaccgACCAgCUCGGCGCCa -3'
miRNA:   3'- cGGa-GCCGaaga-------UGGUgGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 87730 0.67 0.686091
Target:  5'- gGCCUCGGCgaacUUCUccgggucguCCAUCUCcuugauGGCGUCc -3'
miRNA:   3'- -CGGAGCCG----AAGAu--------GGUGGAG------CCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 96723 0.67 0.671911
Target:  5'- cGgCUCGGCgaugauguagACCGCCcgCGGCGUg -3'
miRNA:   3'- -CgGAGCCGaaga------UGGUGGa-GCCGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.