miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20612 3' -58.4 NC_004688.1 + 101188 0.78 0.173515
Target:  5'- aGCCUCgcgaaGGCUgaUGCCGCCuUCGGCGUCg -3'
miRNA:   3'- -CGGAG-----CCGAagAUGGUGG-AGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 21596 0.75 0.282579
Target:  5'- cGUCUcCGGCUUCggcguCCAUCUCGGCGg- -3'
miRNA:   3'- -CGGA-GCCGAAGau---GGUGGAGCCGCgg -5'
20612 3' -58.4 NC_004688.1 + 44799 0.74 0.302981
Target:  5'- cGUCUCGGCcUCUGCCucgaCUUGGgGCUg -3'
miRNA:   3'- -CGGAGCCGaAGAUGGug--GAGCCgCGG- -5'
20612 3' -58.4 NC_004688.1 + 100761 0.72 0.387305
Target:  5'- gGCCgacagcgCGGCgcgcUCUucaGCCUUGGCGCCg -3'
miRNA:   3'- -CGGa------GCCGa---AGAuggUGGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 14044 0.72 0.421571
Target:  5'- --gUCGGCgUUCUGCCcguGgUUCGGCGCCc -3'
miRNA:   3'- cggAGCCG-AAGAUGG---UgGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 54779 0.71 0.439375
Target:  5'- -gCUUGGCagCUGCC-CCUCGG-GCCu -3'
miRNA:   3'- cgGAGCCGaaGAUGGuGGAGCCgCGG- -5'
20612 3' -58.4 NC_004688.1 + 65946 0.71 0.448437
Target:  5'- cGCUUgGGCUUCUcaGCCugUUCaGCGaCCg -3'
miRNA:   3'- -CGGAgCCGAAGA--UGGugGAGcCGC-GG- -5'
20612 3' -58.4 NC_004688.1 + 81166 0.71 0.457601
Target:  5'- uGCC-CGGCUggggAUCACC-CGGcCGCCa -3'
miRNA:   3'- -CGGaGCCGAaga-UGGUGGaGCC-GCGG- -5'
20612 3' -58.4 NC_004688.1 + 101457 0.7 0.495214
Target:  5'- -gCUCGGCUUCUGuguaggucuCUACCUC-GCGCg -3'
miRNA:   3'- cgGAGCCGAAGAU---------GGUGGAGcCGCGg -5'
20612 3' -58.4 NC_004688.1 + 14710 0.7 0.495214
Target:  5'- aCCUCaGCaUCcgGCCACCgcaagCGGCGCa -3'
miRNA:   3'- cGGAGcCGaAGa-UGGUGGa----GCCGCGg -5'
20612 3' -58.4 NC_004688.1 + 107093 0.7 0.514542
Target:  5'- gGCCagGGUUUCUGCgACCcuuccgUUGGcCGCCa -3'
miRNA:   3'- -CGGagCCGAAGAUGgUGG------AGCC-GCGG- -5'
20612 3' -58.4 NC_004688.1 + 45175 0.7 0.52432
Target:  5'- cGCC-CGGCgccuagCUugCgGCCUCGGCGaCg -3'
miRNA:   3'- -CGGaGCCGaa----GAugG-UGGAGCCGCgG- -5'
20612 3' -58.4 NC_004688.1 + 54340 0.7 0.533181
Target:  5'- cGCCUUGacccuacGCUUgUAguCCGCCUCGGCcucaaGCCa -3'
miRNA:   3'- -CGGAGC-------CGAAgAU--GGUGGAGCCG-----CGG- -5'
20612 3' -58.4 NC_004688.1 + 87989 0.7 0.534169
Target:  5'- cGCCgCGGCgccuacccCUACCGCCgCGGCGa- -3'
miRNA:   3'- -CGGaGCCGaa------GAUGGUGGaGCCGCgg -5'
20612 3' -58.4 NC_004688.1 + 25583 0.7 0.534169
Target:  5'- cGCCUCGGCcUCccGCaGCCUgaUGGCgGCCa -3'
miRNA:   3'- -CGGAGCCGaAGa-UGgUGGA--GCCG-CGG- -5'
20612 3' -58.4 NC_004688.1 + 93130 0.7 0.544082
Target:  5'- cGCUuaggagCGGCUUCgacgGCCugCUCGaGCGgCu -3'
miRNA:   3'- -CGGa-----GCCGAAGa---UGGugGAGC-CGCgG- -5'
20612 3' -58.4 NC_004688.1 + 78369 0.7 0.544082
Target:  5'- cCCUCGacccacgacuGCUgaauaacgccggUCUGCUuaACCUCGGCGUCa -3'
miRNA:   3'- cGGAGC----------CGA------------AGAUGG--UGGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 71669 0.7 0.544082
Target:  5'- cGCCUgGGU---UACCGCCgguuuggucggCGGCGCUg -3'
miRNA:   3'- -CGGAgCCGaagAUGGUGGa----------GCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 101158 0.7 0.544082
Target:  5'- gGCCUCGGggUCgacgcCCAUUUCGGCGa- -3'
miRNA:   3'- -CGGAGCCgaAGau---GGUGGAGCCGCgg -5'
20612 3' -58.4 NC_004688.1 + 101395 0.69 0.590354
Target:  5'- cGCCUCGcGCUggaggaagucaacCUugCGcaugcCCUCGGgGCCg -3'
miRNA:   3'- -CGGAGC-CGAa------------GAugGU-----GGAGCCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.