miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20612 3' -58.4 NC_004688.1 + 102395 0.67 0.665814
Target:  5'- cGCCgaguUCGGCUgggguUCUugCGCCgguucuucCGGCGgCa -3'
miRNA:   3'- -CGG----AGCCGA-----AGAugGUGGa-------GCCGCgG- -5'
20612 3' -58.4 NC_004688.1 + 35031 0.67 0.665814
Target:  5'- cGCCUCGaGUUugUCgGCCgcgGCCUCGuCGCCc -3'
miRNA:   3'- -CGGAGC-CGA--AGaUGG---UGGAGCcGCGG- -5'
20612 3' -58.4 NC_004688.1 + 50880 0.67 0.665814
Target:  5'- aGCCagcUCGGCccgagggUGCCACCgcgcCGGCGaCCa -3'
miRNA:   3'- -CGG---AGCCGaag----AUGGUGGa---GCCGC-GG- -5'
20612 3' -58.4 NC_004688.1 + 101296 0.68 0.65563
Target:  5'- gGCCUCGGU---UGCCGCC-CGGagGUCu -3'
miRNA:   3'- -CGGAGCCGaagAUGGUGGaGCCg-CGG- -5'
20612 3' -58.4 NC_004688.1 + 23112 0.68 0.65563
Target:  5'- cGCCUCGuc--CUGCC-CUUUGGUGCCc -3'
miRNA:   3'- -CGGAGCcgaaGAUGGuGGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 24815 0.68 0.651551
Target:  5'- cCCUCGGCguccUCUAgcauguccgcgaaCACC-CGGCGCUc -3'
miRNA:   3'- cGGAGCCGa---AGAUg------------GUGGaGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 90803 0.68 0.645428
Target:  5'- uCCUCGGCcuuUUCcugACCACUggGGCGgCa -3'
miRNA:   3'- cGGAGCCG---AAGa--UGGUGGagCCGCgG- -5'
20612 3' -58.4 NC_004688.1 + 97094 0.68 0.642365
Target:  5'- cGCCacgcgCGGCUUCaggUGCCGCUUCugaucgauuacaugGGCgGCCu -3'
miRNA:   3'- -CGGa----GCCGAAG---AUGGUGGAG--------------CCG-CGG- -5'
20612 3' -58.4 NC_004688.1 + 93810 0.68 0.635215
Target:  5'- cGCCUUGGCgacCUcGCCGCCguUUGG-GCCc -3'
miRNA:   3'- -CGGAGCCGaa-GA-UGGUGG--AGCCgCGG- -5'
20612 3' -58.4 NC_004688.1 + 18663 0.68 0.625
Target:  5'- uGCCUCGGCUau--CCGCagUCGGgaaUGCCa -3'
miRNA:   3'- -CGGAGCCGAagauGGUGg-AGCC---GCGG- -5'
20612 3' -58.4 NC_004688.1 + 53086 0.68 0.625
Target:  5'- cGUCUCGGUgaagaggcacUCUucCCACguggCUUGGCGCCa -3'
miRNA:   3'- -CGGAGCCGa---------AGAu-GGUG----GAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 30622 0.68 0.625
Target:  5'- aUCUCGGCg--UAUCGCCggUCGGCGUa -3'
miRNA:   3'- cGGAGCCGaagAUGGUGG--AGCCGCGg -5'
20612 3' -58.4 NC_004688.1 + 101927 0.68 0.61479
Target:  5'- cGUCggUGGCUUC--CCACUUCuGCGCCu -3'
miRNA:   3'- -CGGa-GCCGAAGauGGUGGAGcCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 51907 0.69 0.604594
Target:  5'- uGCCUCGGCUggaGCCuCCg-GGUGCg -3'
miRNA:   3'- -CGGAGCCGAagaUGGuGGagCCGCGg -5'
20612 3' -58.4 NC_004688.1 + 56474 0.69 0.604594
Target:  5'- gGUCUCGGCg---AUCuCCUCGGC-CCg -3'
miRNA:   3'- -CGGAGCCGaagaUGGuGGAGCCGcGG- -5'
20612 3' -58.4 NC_004688.1 + 101395 0.69 0.590354
Target:  5'- cGCCUCGcGCUggaggaagucaacCUugCGcaugcCCUCGGgGCCg -3'
miRNA:   3'- -CGGAGC-CGAa------------GAugGU-----GGAGCCgCGG- -5'
20612 3' -58.4 NC_004688.1 + 78369 0.7 0.544082
Target:  5'- cCCUCGacccacgacuGCUgaauaacgccggUCUGCUuaACCUCGGCGUCa -3'
miRNA:   3'- cGGAGC----------CGA------------AGAUGG--UGGAGCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 71669 0.7 0.544082
Target:  5'- cGCCUgGGU---UACCGCCgguuuggucggCGGCGCUg -3'
miRNA:   3'- -CGGAgCCGaagAUGGUGGa----------GCCGCGG- -5'
20612 3' -58.4 NC_004688.1 + 101158 0.7 0.544082
Target:  5'- gGCCUCGGggUCgacgcCCAUUUCGGCGa- -3'
miRNA:   3'- -CGGAGCCgaAGau---GGUGGAGCCGCgg -5'
20612 3' -58.4 NC_004688.1 + 93130 0.7 0.544082
Target:  5'- cGCUuaggagCGGCUUCgacgGCCugCUCGaGCGgCu -3'
miRNA:   3'- -CGGa-----GCCGAAGa---UGGugGAGC-CGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.