miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20612 5' -53.7 NC_004688.1 + 51632 0.66 0.951312
Target:  5'- uCGGCAUGGuGGaGAcCGaGCGGCugCu -3'
miRNA:   3'- uGCCGUGCCuCUaCU-GCaUGCUGugG- -5'
20612 5' -53.7 NC_004688.1 + 79840 0.66 0.947003
Target:  5'- -aGGCugGcGAGGUugccaggucgucGGCGUugGCGAuCACCa -3'
miRNA:   3'- ugCCGugC-CUCUA------------CUGCA--UGCU-GUGG- -5'
20612 5' -53.7 NC_004688.1 + 57636 0.66 0.947003
Target:  5'- cACGGCGCGGuauUGGCGccaggugggcUACGG-ACCg -3'
miRNA:   3'- -UGCCGUGCCucuACUGC----------AUGCUgUGG- -5'
20612 5' -53.7 NC_004688.1 + 75430 0.66 0.944301
Target:  5'- gUGGCccccuCGGAGGccuugaaguucacagUGGCGcUAcCGACACCa -3'
miRNA:   3'- uGCCGu----GCCUCU---------------ACUGC-AU-GCUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 1710 0.66 0.94245
Target:  5'- -aGGCAgCGGAGuucGUGACGUucuaccuCGAaACCa -3'
miRNA:   3'- ugCCGU-GCCUC---UACUGCAu------GCUgUGG- -5'
20612 5' -53.7 NC_004688.1 + 58476 0.66 0.94245
Target:  5'- gACGGgcaCGCGGAGAagcgGugGUGCGGgGaCUg -3'
miRNA:   3'- -UGCC---GUGCCUCUa---CugCAUGCUgU-GG- -5'
20612 5' -53.7 NC_004688.1 + 68953 0.66 0.93765
Target:  5'- aACGGauCGCGGuAGuUGGCGcccucCGACACCu -3'
miRNA:   3'- -UGCC--GUGCC-UCuACUGCau---GCUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 17621 0.66 0.93765
Target:  5'- uUGGUGCGGGuGAUGcgccCGUG-GGCACCg -3'
miRNA:   3'- uGCCGUGCCU-CUACu---GCAUgCUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 35508 0.66 0.93765
Target:  5'- gGCGGCGcCGGcGAgaagGAUGUugcCGAuCGCCa -3'
miRNA:   3'- -UGCCGU-GCCuCUa---CUGCAu--GCU-GUGG- -5'
20612 5' -53.7 NC_004688.1 + 95804 0.66 0.932602
Target:  5'- cGCGGaCACGGcaaGGAUuGCGUACGGUGCg -3'
miRNA:   3'- -UGCC-GUGCC---UCUAcUGCAUGCUGUGg -5'
20612 5' -53.7 NC_004688.1 + 17386 0.66 0.932602
Target:  5'- cGCGGC-CGGGcGUGAgGU-CG-CACCa -3'
miRNA:   3'- -UGCCGuGCCUcUACUgCAuGCuGUGG- -5'
20612 5' -53.7 NC_004688.1 + 69966 0.66 0.932602
Target:  5'- cUGGcCACGGAcccggacgcgGAUGGCGUcaaccccccGCGAC-CCg -3'
miRNA:   3'- uGCC-GUGCCU----------CUACUGCA---------UGCUGuGG- -5'
20612 5' -53.7 NC_004688.1 + 71694 0.67 0.921755
Target:  5'- gGCGGCGCuGGAcccguUGGCcc-CGGCACCg -3'
miRNA:   3'- -UGCCGUG-CCUcu---ACUGcauGCUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 71076 0.67 0.915956
Target:  5'- uGCGGCgucugcgacuGCGGGGGUGAggaGUGCGAgGgUg -3'
miRNA:   3'- -UGCCG----------UGCCUCUACUg--CAUGCUgUgG- -5'
20612 5' -53.7 NC_004688.1 + 72765 0.67 0.902972
Target:  5'- ---cCACGGGGAUGcgacuaaugcucaGCGUGCccGACACCa -3'
miRNA:   3'- ugccGUGCCUCUAC-------------UGCAUG--CUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 56385 0.68 0.876027
Target:  5'- uUGGCGCcggaGGAGAUGGCcaGCGAgGCg -3'
miRNA:   3'- uGCCGUG----CCUCUACUGcaUGCUgUGg -5'
20612 5' -53.7 NC_004688.1 + 70956 0.68 0.868548
Target:  5'- cACGGUgccguCGGGGuuuuUGGCGUAgguccaguCGGCGCCu -3'
miRNA:   3'- -UGCCGu----GCCUCu---ACUGCAU--------GCUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 78926 0.68 0.868548
Target:  5'- aGCGGCGCaaGGAUGAUGUucaccaACuGCGCCg -3'
miRNA:   3'- -UGCCGUGccUCUACUGCA------UGcUGUGG- -5'
20612 5' -53.7 NC_004688.1 + 82508 0.68 0.860847
Target:  5'- gUGGC-CGGAcugGGUGACGgugGCGuuguCGCCg -3'
miRNA:   3'- uGCCGuGCCU---CUACUGCa--UGCu---GUGG- -5'
20612 5' -53.7 NC_004688.1 + 4383 0.68 0.860847
Target:  5'- uACGGUGCGGcccucguGGUGcACGUGCGAUgAUCg -3'
miRNA:   3'- -UGCCGUGCCu------CUAC-UGCAUGCUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.