miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20615 5' -51 NC_004688.1 + 14363 0.66 0.980545
Target:  5'- aUCCGaCCGaCUUAacGGGagaggUGGCAGCa -3'
miRNA:   3'- cAGGC-GGC-GAAUa-CCCgaa--AUUGUCG- -5'
20615 5' -51 NC_004688.1 + 26795 0.66 0.972785
Target:  5'- -gCCGCggaGCUUGaGGGCUcUGAucCGGCg -3'
miRNA:   3'- caGGCGg--CGAAUaCCCGAaAUU--GUCG- -5'
20615 5' -51 NC_004688.1 + 93883 0.67 0.955262
Target:  5'- aGUCCgGCCGCggUGcGGGCgaUGACgucGGCc -3'
miRNA:   3'- -CAGG-CGGCGa-AUaCCCGaaAUUG---UCG- -5'
20615 5' -51 NC_004688.1 + 79207 0.67 0.955262
Target:  5'- -cUgGCCGCgca-GGGCg--GACAGCu -3'
miRNA:   3'- caGgCGGCGaauaCCCGaaaUUGUCG- -5'
20615 5' -51 NC_004688.1 + 57347 0.67 0.955262
Target:  5'- --gCGCCGCUacccgagGGGCUUUuGgGGCu -3'
miRNA:   3'- cagGCGGCGAaua----CCCGAAAuUgUCG- -5'
20615 5' -51 NC_004688.1 + 37373 0.67 0.951006
Target:  5'- --aCGCCGCgcccUGcGGCgg-GGCAGCa -3'
miRNA:   3'- cagGCGGCGaau-AC-CCGaaaUUGUCG- -5'
20615 5' -51 NC_004688.1 + 93825 0.67 0.951006
Target:  5'- -gCCGCCGUUUGggcccgaccaGGGCUUgcguGgGGCa -3'
miRNA:   3'- caGGCGGCGAAUa---------CCCGAAau--UgUCG- -5'
20615 5' -51 NC_004688.1 + 93916 0.67 0.951006
Target:  5'- uGUUCgggGCCGCUggcGGGCUUcaacACGGCg -3'
miRNA:   3'- -CAGG---CGGCGAauaCCCGAAau--UGUCG- -5'
20615 5' -51 NC_004688.1 + 6335 0.68 0.946488
Target:  5'- aUCCGaCCaGCgguuacgUGUGGGUggagcugGACAGCg -3'
miRNA:   3'- cAGGC-GG-CGa------AUACCCGaaa----UUGUCG- -5'
20615 5' -51 NC_004688.1 + 69469 0.68 0.946488
Target:  5'- cUCCGUaCGUccGUGGGC---GACAGCg -3'
miRNA:   3'- cAGGCG-GCGaaUACCCGaaaUUGUCG- -5'
20615 5' -51 NC_004688.1 + 65940 0.69 0.913725
Target:  5'- cUCCGaCGCU--UGGGCUUcu-CAGCc -3'
miRNA:   3'- cAGGCgGCGAauACCCGAAauuGUCG- -5'
20615 5' -51 NC_004688.1 + 66096 0.69 0.893698
Target:  5'- -cCCGCCGCggugGUGGccGCg--AACAGUa -3'
miRNA:   3'- caGGCGGCGaa--UACC--CGaaaUUGUCG- -5'
20615 5' -51 NC_004688.1 + 10286 0.7 0.87133
Target:  5'- -aCCGCC-CUgggGGGCUUcuuuGCGGCg -3'
miRNA:   3'- caGGCGGcGAauaCCCGAAau--UGUCG- -5'
20615 5' -51 NC_004688.1 + 2241 0.7 0.863378
Target:  5'- -aCCGCCGUagGUGGGaacgAugAGCg -3'
miRNA:   3'- caGGCGGCGaaUACCCgaaaUugUCG- -5'
20615 5' -51 NC_004688.1 + 84565 0.71 0.810963
Target:  5'- -gCCGCCGCccugGGGCUgc--CAGCc -3'
miRNA:   3'- caGGCGGCGaauaCCCGAaauuGUCG- -5'
20615 5' -51 NC_004688.1 + 89691 0.73 0.741611
Target:  5'- -cCCGCCGCUUAUGGGUagaucaaUUAGgAGa -3'
miRNA:   3'- caGGCGGCGAAUACCCGa------AAUUgUCg -5'
20615 5' -51 NC_004688.1 + 44540 0.73 0.730131
Target:  5'- uGUCCGCCuCgaagGGGCUUUuguacucGGCGGCg -3'
miRNA:   3'- -CAGGCGGcGaauaCCCGAAA-------UUGUCG- -5'
20615 5' -51 NC_004688.1 + 98452 0.74 0.656046
Target:  5'- aUCCGCCGCcagaaGGGCgu--GCAGCc -3'
miRNA:   3'- cAGGCGGCGaaua-CCCGaaauUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.