miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20626 3' -55.2 NC_004688.1 + 58696 0.66 0.880975
Target:  5'- uGUGGCGGUAgucCAacuACCCGaAC-CCAa -3'
miRNA:   3'- uCACCGCCAUa--GU---UGGGCaUGcGGUg -5'
20626 3' -55.2 NC_004688.1 + 84627 0.66 0.866012
Target:  5'- --cGGCGGU-UUGACCCGccucgAgGCCGCc -3'
miRNA:   3'- ucaCCGCCAuAGUUGGGCa----UgCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 105005 0.67 0.841078
Target:  5'- --cGGCGGUGUUAugggucgggacgaACCCGUGacccaCCACg -3'
miRNA:   3'- ucaCCGCCAUAGU-------------UGGGCAUgc---GGUG- -5'
20626 3' -55.2 NC_004688.1 + 108332 0.67 0.816003
Target:  5'- cGGUGGCGGUGgCcAUCUGggcGCGCCu- -3'
miRNA:   3'- -UCACCGCCAUaGuUGGGCa--UGCGGug -5'
20626 3' -55.2 NC_004688.1 + 4365 0.67 0.816003
Target:  5'- uGUGuG-GGUAgCAACCCGUACGgUGCg -3'
miRNA:   3'- uCAC-CgCCAUaGUUGGGCAUGCgGUG- -5'
20626 3' -55.2 NC_004688.1 + 65778 0.68 0.795978
Target:  5'- cGUcGGUGGUggCGGCCUGcuuagcguugugGCGCCGCg -3'
miRNA:   3'- uCA-CCGCCAuaGUUGGGCa-----------UGCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 81170 0.69 0.749798
Target:  5'- --cGGCuGGggAUC-ACCCGgcCGCCACa -3'
miRNA:   3'- ucaCCG-CCa-UAGuUGGGCauGCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 22490 0.69 0.749798
Target:  5'- gAGUGGgGGUAUUucaUCGgcCGCCGCc -3'
miRNA:   3'- -UCACCgCCAUAGuugGGCauGCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 89670 0.69 0.739824
Target:  5'- aAGcGGCGGacaCAGCCCGagccCGCCGCu -3'
miRNA:   3'- -UCaCCGCCauaGUUGGGCau--GCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 102558 0.7 0.688659
Target:  5'- uGGUaGGCGGUGaaaCGGgCCGUGacauCGCCACg -3'
miRNA:   3'- -UCA-CCGCCAUa--GUUgGGCAU----GCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 23225 0.71 0.636246
Target:  5'- --cGGuCGG--UCGGCCCGcGCGCCACc -3'
miRNA:   3'- ucaCC-GCCauAGUUGGGCaUGCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 12314 0.71 0.625717
Target:  5'- -uUGGCGGUGucUCAACagGcGCGCCGCa -3'
miRNA:   3'- ucACCGCCAU--AGUUGggCaUGCGGUG- -5'
20626 3' -55.2 NC_004688.1 + 71689 0.71 0.615193
Target:  5'- uGGUcGGCGGcgcUgGACCCGUugGCCcCg -3'
miRNA:   3'- -UCA-CCGCCau-AgUUGGGCAugCGGuG- -5'
20626 3' -55.2 NC_004688.1 + 108095 0.76 0.332803
Target:  5'- uGGUGGCGGUGaggCAGCCCucuuUGCCGCc -3'
miRNA:   3'- -UCACCGCCAUa--GUUGGGcau-GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.