miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20637 5' -56.8 NC_004688.1 + 24029 0.66 0.846428
Target:  5'- cGUuGaCGGCACGGccaUCGCUggaagCCGUCACc -3'
miRNA:   3'- cCGuC-GCUGUGCU---AGCGGa----GGCAGUG- -5'
20637 5' -56.8 NC_004688.1 + 78664 0.66 0.83825
Target:  5'- gGGCAGUGAC-CGucUgGCCUUCGccCACc -3'
miRNA:   3'- -CCGUCGCUGuGCu-AgCGGAGGCa-GUG- -5'
20637 5' -56.8 NC_004688.1 + 99121 0.66 0.837422
Target:  5'- aGGUAGUcagguucGAUGCGGUCGUCgUCGUCAa -3'
miRNA:   3'- -CCGUCG-------CUGUGCUAGCGGaGGCAGUg -5'
20637 5' -56.8 NC_004688.1 + 45193 0.66 0.835759
Target:  5'- cGGCcucGGCGACGCGcugagccaacaggcgCGCCUCC-UCGg -3'
miRNA:   3'- -CCG---UCGCUGUGCua-------------GCGGAGGcAGUg -5'
20637 5' -56.8 NC_004688.1 + 22963 0.66 0.82133
Target:  5'- aGGgAuGCGACGCGGUUuucgGCCa-CGUCGCg -3'
miRNA:   3'- -CCgU-CGCUGUGCUAG----CGGagGCAGUG- -5'
20637 5' -56.8 NC_004688.1 + 79357 0.66 0.812603
Target:  5'- aGCAGCGGCGCaa---CCUCCG-CGCa -3'
miRNA:   3'- cCGUCGCUGUGcuagcGGAGGCaGUG- -5'
20637 5' -56.8 NC_004688.1 + 85051 0.66 0.812603
Target:  5'- cGCAGCGACG-GGUCGaugCCGcCACc -3'
miRNA:   3'- cCGUCGCUGUgCUAGCggaGGCaGUG- -5'
20637 5' -56.8 NC_004688.1 + 106799 0.67 0.776115
Target:  5'- cGCGGCGuagGCGCGcAUCGUCucgaugagUCCGUCGa -3'
miRNA:   3'- cCGUCGC---UGUGC-UAGCGG--------AGGCAGUg -5'
20637 5' -56.8 NC_004688.1 + 52330 0.67 0.766642
Target:  5'- cGGCAGCGGCGC-AUgGCCaUCCuGUUc- -3'
miRNA:   3'- -CCGUCGCUGUGcUAgCGG-AGG-CAGug -5'
20637 5' -56.8 NC_004688.1 + 42185 0.67 0.766642
Target:  5'- aGCGGCGACugGAUCuGCaaguggCCGccCGCu -3'
miRNA:   3'- cCGUCGCUGugCUAG-CGga----GGCa-GUG- -5'
20637 5' -56.8 NC_004688.1 + 96973 0.67 0.757047
Target:  5'- -aCAGCGugGCGGcgaaaGCCUCCGcCAa -3'
miRNA:   3'- ccGUCGCugUGCUag---CGGAGGCaGUg -5'
20637 5' -56.8 NC_004688.1 + 75992 0.67 0.74734
Target:  5'- cGGCGGC--CAUGA-CGUUUCCGUCAg -3'
miRNA:   3'- -CCGUCGcuGUGCUaGCGGAGGCAGUg -5'
20637 5' -56.8 NC_004688.1 + 36876 0.67 0.74734
Target:  5'- uGGCAGCGG--UGAUCGCUgUCGUC-Ca -3'
miRNA:   3'- -CCGUCGCUguGCUAGCGGaGGCAGuG- -5'
20637 5' -56.8 NC_004688.1 + 67520 0.67 0.746363
Target:  5'- uGGCAGCcccugcuGGCGCaAUCGCgCUC-GUCGCg -3'
miRNA:   3'- -CCGUCG-------CUGUGcUAGCG-GAGgCAGUG- -5'
20637 5' -56.8 NC_004688.1 + 66149 0.68 0.73753
Target:  5'- gGGCAGCGGCucu-UCGCCaCUaGUCACc -3'
miRNA:   3'- -CCGUCGCUGugcuAGCGGaGG-CAGUG- -5'
20637 5' -56.8 NC_004688.1 + 100790 0.68 0.717639
Target:  5'- uGGCGcCGugGCGAUCGCCUgaCGcUCGg -3'
miRNA:   3'- -CCGUcGCugUGCUAGCGGAg-GC-AGUg -5'
20637 5' -56.8 NC_004688.1 + 30232 0.68 0.714627
Target:  5'- uGCGGgGACucgccccccgccuuGuCGAUCGCCUUCGcCACg -3'
miRNA:   3'- cCGUCgCUG--------------U-GCUAGCGGAGGCaGUG- -5'
20637 5' -56.8 NC_004688.1 + 93245 0.69 0.677037
Target:  5'- cGGCGGCaacaucgucGGCGCGAUCGgCgcggCCGgCGCu -3'
miRNA:   3'- -CCGUCG---------CUGUGCUAGCgGa---GGCaGUG- -5'
20637 5' -56.8 NC_004688.1 + 66555 0.7 0.625502
Target:  5'- cGGCguuGGCGAaaucuaggACGAUcCGCCUCCccGUCACc -3'
miRNA:   3'- -CCG---UCGCUg-------UGCUA-GCGGAGG--CAGUG- -5'
20637 5' -56.8 NC_004688.1 + 68861 0.7 0.594575
Target:  5'- cGGCcugGGCGGCGgGGUCGCCggUCCGg-ACg -3'
miRNA:   3'- -CCG---UCGCUGUgCUAGCGG--AGGCagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.