miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2064 5' -58.9 NC_001348.1 + 108820 0.66 0.766738
Target:  5'- cCACACCCgauuCUCGGAG-GCCGGc- -3'
miRNA:   3'- -GUGUGGGagcuGGGCCUCaUGGCCaa -5'
2064 5' -58.9 NC_001348.1 + 120972 0.66 0.766738
Target:  5'- cCACACCCgauuCUCGGAG-GCCGGc- -3'
miRNA:   3'- -GUGUGGGagcuGGGCCUCaUGGCCaa -5'
2064 5' -58.9 NC_001348.1 + 105637 0.66 0.757294
Target:  5'- aACACCCUCG-CCCaGGugGGUacgucGCCGGc- -3'
miRNA:   3'- gUGUGGGAGCuGGG-CC--UCA-----UGGCCaa -5'
2064 5' -58.9 NC_001348.1 + 124155 0.66 0.757294
Target:  5'- aACACCCUCG-CCCaGGugGGUacgucGCCGGc- -3'
miRNA:   3'- gUGUGGGAGCuGGG-CC--UCA-----UGGCCaa -5'
2064 5' -58.9 NC_001348.1 + 104903 0.66 0.747741
Target:  5'- gGCcUCCUCu-CCCGGGGUccGCCGGg- -3'
miRNA:   3'- gUGuGGGAGcuGGGCCUCA--UGGCCaa -5'
2064 5' -58.9 NC_001348.1 + 16656 0.66 0.728343
Target:  5'- aUACACCaCagGAgCCGaGGUACCGGUg -3'
miRNA:   3'- -GUGUGG-GagCUgGGCcUCAUGGCCAa -5'
2064 5' -58.9 NC_001348.1 + 17585 0.68 0.63497
Target:  5'- uGCGCCa-CGGCCCGGgaaaaccacauaugGGUGCUGGUc -3'
miRNA:   3'- gUGUGGgaGCUGGGCC--------------UCAUGGCCAa -5'
2064 5' -58.9 NC_001348.1 + 42496 0.68 0.617685
Target:  5'- gCACGCCUUgGGCCgCGGgcGGUGauCCGGUUg -3'
miRNA:   3'- -GUGUGGGAgCUGG-GCC--UCAU--GGCCAA- -5'
2064 5' -58.9 NC_001348.1 + 71372 0.69 0.577201
Target:  5'- cCACACCCUUGGCCCaauaaaGGA-UACCGuGUc -3'
miRNA:   3'- -GUGUGGGAGCUGGG------CCUcAUGGC-CAa -5'
2064 5' -58.9 NC_001348.1 + 92217 1.05 0.002519
Target:  5'- aCACACCCUCGACCCGGAGUACCGGUUc -3'
miRNA:   3'- -GUGUGGGAGCUGGGCCUCAUGGCCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.