Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20640 | 3' | -47.4 | NC_004688.1 | + | 43955 | 0.66 | 0.9991 |
Target: 5'- uCUCcuUGAugGACuuaaguUCCCCGGAAAugUCg -3' miRNA: 3'- -GAG--AUUugUUGu-----GGGGGUCUUUugGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 67914 | 0.66 | 0.9991 |
Target: 5'- -gCUu-GCGcACACCCCCGGGGuGGCgCCg -3' miRNA: 3'- gaGAuuUGU-UGUGGGGGUCUU-UUG-GG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 89172 | 0.66 | 0.999173 |
Target: 5'- uUCUcAAC-GCGCUCCUGGAauucgcgguucaugcGAGCCCa -3' miRNA: 3'- gAGAuUUGuUGUGGGGGUCU---------------UUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 27215 | 0.66 | 0.999273 |
Target: 5'- gCUCaAGAagauaGGCGCCCCCcacaAGGAcGCCUg -3' miRNA: 3'- -GAGaUUUg----UUGUGGGGG----UCUUuUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 63415 | 0.66 | 0.999273 |
Target: 5'- uUCgau-CGACACCCUCAaAAAauGCCCc -3' miRNA: 3'- gAGauuuGUUGUGGGGGUcUUU--UGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 95173 | 0.66 | 0.999273 |
Target: 5'- -aUUGggUAACGCcggggggugaaCCCCAGAGAaaagagaaACCCa -3' miRNA: 3'- gaGAUuuGUUGUG-----------GGGGUCUUU--------UGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 19423 | 0.66 | 0.999417 |
Target: 5'- aCUCggggcggugGAACuuCACgCCCAGGccGAGCUCa -3' miRNA: 3'- -GAGa--------UUUGuuGUGgGGGUCU--UUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 70539 | 0.66 | 0.999417 |
Target: 5'- ---gAGGCAuGCGCCCCCuuucgggcauGGAaAAGCCCc -3' miRNA: 3'- gagaUUUGU-UGUGGGGG----------UCU-UUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 93937 | 0.66 | 0.998892 |
Target: 5'- uUCaacACGGCGCcggggaagCCCCAGuAGGGCCCa -3' miRNA: 3'- gAGauuUGUUGUG--------GGGGUC-UUUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 74558 | 0.66 | 0.998892 |
Target: 5'- gCUCggcgcGAACGACaACCCgaaaCCGGGAGACUg -3' miRNA: 3'- -GAGa----UUUGUUG-UGGG----GGUCUUUUGGg -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 72218 | 0.66 | 0.998561 |
Target: 5'- aCUCUGGuagcccGCAcCGCCCCCGccuccgccaccaacGAGGgucACCCa -3' miRNA: 3'- -GAGAUU------UGUuGUGGGGGU--------------CUUU---UGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 77732 | 0.66 | 0.998644 |
Target: 5'- gCUCguaggaGAugAAC-UCCCCGGggGcGCCCg -3' miRNA: 3'- -GAGa-----UUugUUGuGGGGGUCuuU-UGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 97328 | 0.66 | 0.998644 |
Target: 5'- uUCgauGCcccGCACCUCCGGAuAGGCCUg -3' miRNA: 3'- gAGauuUGu--UGUGGGGGUCU-UUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 92583 | 0.66 | 0.998644 |
Target: 5'- uUCUuGGCGAUGCCCcagcugcgguCCAcGAGGCCCg -3' miRNA: 3'- gAGAuUUGUUGUGGG----------GGUcUUUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 42465 | 0.66 | 0.998892 |
Target: 5'- -aCUGAGCGuccaGCACUCgCCAGGcgAGGCCa -3' miRNA: 3'- gaGAUUUGU----UGUGGG-GGUCU--UUUGGg -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 56503 | 0.66 | 0.998892 |
Target: 5'- uCUCUGuGCGcuccuGCAUCgUCCuGAGAGCCCc -3' miRNA: 3'- -GAGAUuUGU-----UGUGG-GGGuCUUUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 100973 | 0.66 | 0.998892 |
Target: 5'- --aUAGGCGACuuugaagaaACCCCCAGu--GCCa -3' miRNA: 3'- gagAUUUGUUG---------UGGGGGUCuuuUGGg -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 71902 | 0.66 | 0.998892 |
Target: 5'- ----uAACGACGgCCCCGGc-AACCCc -3' miRNA: 3'- gagauUUGUUGUgGGGGUCuuUUGGG- -5' |
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20640 | 3' | -47.4 | NC_004688.1 | + | 73770 | 0.66 | 0.999417 |
Target: 5'- -aUUGAGCGGgACCgCCAuGGcgGCCCa -3' miRNA: 3'- gaGAUUUGUUgUGGgGGU-CUuuUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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