miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20640 3' -47.4 NC_004688.1 + 50157 0.7 0.975928
Target:  5'- gCUgUAGGCGACGgugUCCCAGAGGugCCu -3'
miRNA:   3'- -GAgAUUUGUUGUg--GGGGUCUUUugGG- -5'
20640 3' -47.4 NC_004688.1 + 51004 0.71 0.963261
Target:  5'- gCUCUucGCGACGCCCUgcuccuugaggCuuuGAAAACCCc -3'
miRNA:   3'- -GAGAuuUGUUGUGGGG-----------Gu--CUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 54775 0.7 0.983075
Target:  5'- aCUCgcuuGGCAGCugCCCCuc-GGGCCUg -3'
miRNA:   3'- -GAGau--UUGUUGugGGGGucuUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 55910 0.69 0.991275
Target:  5'- gUUUGcuGCAGCACCCCgAGugccgaccucAGACCCg -3'
miRNA:   3'- gAGAUu-UGUUGUGGGGgUCu---------UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 56503 0.66 0.998892
Target:  5'- uCUCUGuGCGcuccuGCAUCgUCCuGAGAGCCCc -3'
miRNA:   3'- -GAGAUuUGU-----UGUGG-GGGuCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 58740 0.68 0.995244
Target:  5'- ---aGGACGACGaguucCCCCCAGcuGACCg -3'
miRNA:   3'- gagaUUUGUUGU-----GGGGGUCuuUUGGg -5'
20640 3' -47.4 NC_004688.1 + 59318 0.71 0.973115
Target:  5'- aUC--GACAGaGCCCUCGGAGGACUCa -3'
miRNA:   3'- gAGauUUGUUgUGGGGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 59737 0.71 0.966789
Target:  5'- uUCUGagguuGAUAAaGCCCUCGGAGGACUCa -3'
miRNA:   3'- gAGAU-----UUGUUgUGGGGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 63415 0.66 0.999273
Target:  5'- uUCgau-CGACACCCUCAaAAAauGCCCc -3'
miRNA:   3'- gAGauuuGUUGUGGGGGUcUUU--UGGG- -5'
20640 3' -47.4 NC_004688.1 + 67914 0.66 0.9991
Target:  5'- -gCUu-GCGcACACCCCCGGGGuGGCgCCg -3'
miRNA:   3'- gaGAuuUGU-UGUGGGGGUCUU-UUG-GG- -5'
20640 3' -47.4 NC_004688.1 + 70539 0.66 0.999417
Target:  5'- ---gAGGCAuGCGCCCCCuuucgggcauGGAaAAGCCCc -3'
miRNA:   3'- gagaUUUGU-UGUGGGGG----------UCU-UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 71902 0.66 0.998892
Target:  5'- ----uAACGACGgCCCCGGc-AACCCc -3'
miRNA:   3'- gagauUUGUUGUgGGGGUCuuUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 71942 0.71 0.959479
Target:  5'- -gCUuc-CAGCGCCCCCGGAc-ACCUg -3'
miRNA:   3'- gaGAuuuGUUGUGGGGGUCUuuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 72218 0.66 0.998561
Target:  5'- aCUCUGGuagcccGCAcCGCCCCCGccuccgccaccaacGAGGgucACCCa -3'
miRNA:   3'- -GAGAUU------UGUuGUGGGGGU--------------CUUU---UGGG- -5'
20640 3' -47.4 NC_004688.1 + 73770 0.66 0.999417
Target:  5'- -aUUGAGCGGgACCgCCAuGGcgGCCCa -3'
miRNA:   3'- gaGAUUUGUUgUGGgGGU-CUuuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 74558 0.66 0.998892
Target:  5'- gCUCggcgcGAACGACaACCCgaaaCCGGGAGACUg -3'
miRNA:   3'- -GAGa----UUUGUUG-UGGG----GGUCUUUUGGg -5'
20640 3' -47.4 NC_004688.1 + 75080 0.7 0.982866
Target:  5'- gCUUggacGACGACGCCCCCccggccccggccgAGAAcGCCUg -3'
miRNA:   3'- -GAGau--UUGUUGUGGGGG-------------UCUUuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 76500 0.7 0.980899
Target:  5'- aUCUGcAACAuCACUCCCGGcuGGCCg -3'
miRNA:   3'- gAGAU-UUGUuGUGGGGGUCuuUUGGg -5'
20640 3' -47.4 NC_004688.1 + 77732 0.66 0.998644
Target:  5'- gCUCguaggaGAugAAC-UCCCCGGggGcGCCCg -3'
miRNA:   3'- -GAGa-----UUugUUGuGGGGGUCuuU-UGGG- -5'
20640 3' -47.4 NC_004688.1 + 78104 0.75 0.867689
Target:  5'- -gUUGAACAggucggcgauaccaGCACCaauaCCCGGAAGGCCCa -3'
miRNA:   3'- gaGAUUUGU--------------UGUGG----GGGUCUUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.