miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20640 3' -47.4 NC_004688.1 + 73770 0.66 0.999417
Target:  5'- -aUUGAGCGGgACCgCCAuGGcgGCCCa -3'
miRNA:   3'- gaGAUUUGUUgUGGgGGU-CUuuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 59318 0.71 0.973115
Target:  5'- aUC--GACAGaGCCCUCGGAGGACUCa -3'
miRNA:   3'- gAGauUUGUUgUGGGGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 82153 0.7 0.975928
Target:  5'- gCUUUGAcCAGCGCCCCUugaGGAGGGCg- -3'
miRNA:   3'- -GAGAUUuGUUGUGGGGG---UCUUUUGgg -5'
20640 3' -47.4 NC_004688.1 + 50157 0.7 0.975928
Target:  5'- gCUgUAGGCGACGgugUCCCAGAGGugCCu -3'
miRNA:   3'- -GAgAUUUGUUGUg--GGGGUCUUUugGG- -5'
20640 3' -47.4 NC_004688.1 + 76500 0.7 0.980899
Target:  5'- aUCUGcAACAuCACUCCCGGcuGGCCg -3'
miRNA:   3'- gAGAU-UUGUuGUGGGGGUCuuUUGGg -5'
20640 3' -47.4 NC_004688.1 + 75080 0.7 0.982866
Target:  5'- gCUUggacGACGACGCCCCCccggccccggccgAGAAcGCCUg -3'
miRNA:   3'- -GAGau--UUGUUGUGGGGG-------------UCUUuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 54775 0.7 0.983075
Target:  5'- aCUCgcuuGGCAGCugCCCCuc-GGGCCUg -3'
miRNA:   3'- -GAGau--UUGUUGugGGGGucuUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 85336 0.7 0.983075
Target:  5'- aUCUGccCAGgACCgCCGGguGACCCa -3'
miRNA:   3'- gAGAUuuGUUgUGGgGGUCuuUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 622 0.7 0.985059
Target:  5'- -aCUAcgGGCAaguauGCGCUCCCAGAAGACa- -3'
miRNA:   3'- gaGAU--UUGU-----UGUGGGGGUCUUUUGgg -5'
20640 3' -47.4 NC_004688.1 + 59737 0.71 0.966789
Target:  5'- uUCUGagguuGAUAAaGCCCUCGGAGGACUCa -3'
miRNA:   3'- gAGAU-----UUGUUgUGGGGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 51004 0.71 0.963261
Target:  5'- gCUCUucGCGACGCCCUgcuccuugaggCuuuGAAAACCCc -3'
miRNA:   3'- -GAGAuuUGUUGUGGGG-----------Gu--CUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 71942 0.71 0.959479
Target:  5'- -gCUuc-CAGCGCCCCCGGAc-ACCUg -3'
miRNA:   3'- gaGAuuuGUUGUGGGGGUCUuuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 31004 0.77 0.779173
Target:  5'- -aCUGAGCGACACCCaCGGGc-GCCCg -3'
miRNA:   3'- gaGAUUUGUUGUGGGgGUCUuuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 99750 0.75 0.836247
Target:  5'- cCUCggu-CAGCACgCCCAGGuuguuGAACCCg -3'
miRNA:   3'- -GAGauuuGUUGUGgGGGUCU-----UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 78104 0.75 0.867689
Target:  5'- -gUUGAACAggucggcgauaccaGCACCaauaCCCGGAAGGCCCa -3'
miRNA:   3'- gaGAUUUGU--------------UGUGG----GGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 84858 0.72 0.941703
Target:  5'- -gCUGAGCGguccgccugccAUACCCCCGGgcAugCCg -3'
miRNA:   3'- gaGAUUUGU-----------UGUGGGGGUCuuUugGG- -5'
20640 3' -47.4 NC_004688.1 + 31252 0.72 0.941703
Target:  5'- cCUCUcagccggguaccAGACGGgGCCCCCgugaGGGGAAUCCa -3'
miRNA:   3'- -GAGA------------UUUGUUgUGGGGG----UCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 13954 0.72 0.95113
Target:  5'- cCUCgUAAACAuccccacaacGCACCguagaCCCgAGAAAACCCa -3'
miRNA:   3'- -GAG-AUUUGU----------UGUGG-----GGG-UCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 20043 0.72 0.955437
Target:  5'- cCUUUuuGCGggcgcgcuGCugCCaCCGGGAGACCCg -3'
miRNA:   3'- -GAGAuuUGU--------UGugGG-GGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 95425 0.72 0.955437
Target:  5'- aUCUug--AGCGCUCCguGAAAGCCCa -3'
miRNA:   3'- gAGAuuugUUGUGGGGguCUUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.