miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20640 3' -47.4 NC_004688.1 + 78351 0.67 0.99835
Target:  5'- -----uGCAGaAUCUCCGGAAGGCCCu -3'
miRNA:   3'- gagauuUGUUgUGGGGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 107787 0.67 0.998005
Target:  5'- aUCac-GCGcCACCCCCGGcggcgaugagcAGAACCCc -3'
miRNA:   3'- gAGauuUGUuGUGGGGGUC-----------UUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 39057 0.67 0.998005
Target:  5'- ---gGAACAGCACCCUCAcc-AACCa -3'
miRNA:   3'- gagaUUUGUUGUGGGGGUcuuUUGGg -5'
20640 3' -47.4 NC_004688.1 + 84821 0.67 0.998005
Target:  5'- ---gGGGCAcgGCUCCgGGGAGGCCCg -3'
miRNA:   3'- gagaUUUGUugUGGGGgUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 15345 0.67 0.998005
Target:  5'- -cCUAGGCGGCcagggGCCgCCGGAGuggcgcAACCCc -3'
miRNA:   3'- gaGAUUUGUUG-----UGGgGGUCUU------UUGGG- -5'
20640 3' -47.4 NC_004688.1 + 104872 0.67 0.998005
Target:  5'- gUCUgGAACAuCACCcucgcgCCCGGGuuGGGCCCg -3'
miRNA:   3'- gAGA-UUUGUuGUGG------GGGUCU--UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 17515 0.67 0.997601
Target:  5'- aUCcGAGaGACGCUCCCAGGugaaGAACUCg -3'
miRNA:   3'- gAGaUUUgUUGUGGGGGUCU----UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 86875 0.67 0.997131
Target:  5'- -aCU-GACGGCcgccaGCgCCCCGGAGAuGCCCg -3'
miRNA:   3'- gaGAuUUGUUG-----UG-GGGGUCUUU-UGGG- -5'
20640 3' -47.4 NC_004688.1 + 46921 0.67 0.997131
Target:  5'- ---cGAACAcgaucGCGCCCCCAcacuggccGggGACCg -3'
miRNA:   3'- gagaUUUGU-----UGUGGGGGU--------CuuUUGGg -5'
20640 3' -47.4 NC_004688.1 + 109705 0.67 0.997131
Target:  5'- uUCUGaAACAAC-CCCgCGGGGAgagucuucucaACCCa -3'
miRNA:   3'- gAGAU-UUGUUGuGGGgGUCUUU-----------UGGG- -5'
20640 3' -47.4 NC_004688.1 + 58740 0.68 0.995244
Target:  5'- ---aGGACGACGaguucCCCCCAGcuGACCg -3'
miRNA:   3'- gagaUUUGUUGU-----GGGGGUCuuUUGGg -5'
20640 3' -47.4 NC_004688.1 + 28156 0.68 0.994427
Target:  5'- ---cGGGCAGCGCacgcgccccaCCCGGAAguAGCCCg -3'
miRNA:   3'- gagaUUUGUUGUGg---------GGGUCUU--UUGGG- -5'
20640 3' -47.4 NC_004688.1 + 44840 0.68 0.994427
Target:  5'- -aCUGGACAACuggaauuguuGCCCCgAGAGuuACCUu -3'
miRNA:   3'- gaGAUUUGUUG----------UGGGGgUCUUu-UGGG- -5'
20640 3' -47.4 NC_004688.1 + 36005 0.68 0.994427
Target:  5'- uCUCUuuACGGCuuCgCCCCAGGuguCCCc -3'
miRNA:   3'- -GAGAuuUGUUGu-G-GGGGUCUuuuGGG- -5'
20640 3' -47.4 NC_004688.1 + 41940 0.68 0.992452
Target:  5'- cCUCcgAAGCGuccGCACCUUCAGAcgccaaggcguGGGCCCu -3'
miRNA:   3'- -GAGa-UUUGU---UGUGGGGGUCU-----------UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 55910 0.69 0.991275
Target:  5'- gUUUGcuGCAGCACCCCgAGugccgaccucAGACCCg -3'
miRNA:   3'- gAGAUu-UGUUGUGGGGgUCu---------UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 11849 0.69 0.989958
Target:  5'- -gCUGGACAuguucaccCGCaCCCCGGAAAugCUg -3'
miRNA:   3'- gaGAUUUGUu-------GUG-GGGGUCUUUugGG- -5'
20640 3' -47.4 NC_004688.1 + 92802 0.69 0.98686
Target:  5'- uUCUuauaGAGCAGCcggGCUCCCGGGAGACg- -3'
miRNA:   3'- gAGA----UUUGUUG---UGGGGGUCUUUUGgg -5'
20640 3' -47.4 NC_004688.1 + 622 0.7 0.985059
Target:  5'- -aCUAcgGGCAaguauGCGCUCCCAGAAGACa- -3'
miRNA:   3'- gaGAU--UUGU-----UGUGGGGGUCUUUUGgg -5'
20640 3' -47.4 NC_004688.1 + 46851 0.7 0.985059
Target:  5'- ---cGAGCGAgcuggccuCAUaCCCCGGAAGGCCCg -3'
miRNA:   3'- gagaUUUGUU--------GUG-GGGGUCUUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.