miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20644 5' -55.8 NC_004688.1 + 85527 0.66 0.871566
Target:  5'- gUGAUCCUCGUgguucugcguugGGCUGCCGCgguccuccaucggGCGa -3'
miRNA:   3'- gACUAGGAGCGg-----------CCGAUGGUGa------------UGCa -5'
20644 5' -55.8 NC_004688.1 + 105839 0.66 0.85293
Target:  5'- gUGAUCCUCGUCGGCgacaaugguuUGCCcgu-CGUc -3'
miRNA:   3'- gACUAGGAGCGGCCG----------AUGGugauGCA- -5'
20644 5' -55.8 NC_004688.1 + 58880 0.67 0.819242
Target:  5'- gCUGGUUCaUCGCCGcugcccuucucGCUGCCgccgcuGCUGCGg -3'
miRNA:   3'- -GACUAGG-AGCGGC-----------CGAUGG------UGAUGCa -5'
20644 5' -55.8 NC_004688.1 + 73225 0.67 0.818362
Target:  5'- -cGAUCCaacacggUCGCCGGggGCCGCcccucgGCGg -3'
miRNA:   3'- gaCUAGG-------AGCGGCCgaUGGUGa-----UGCa -5'
20644 5' -55.8 NC_004688.1 + 65441 0.67 0.801299
Target:  5'- ---uUCCUCGUCGGUcACCACggacuCGUa -3'
miRNA:   3'- gacuAGGAGCGGCCGaUGGUGau---GCA- -5'
20644 5' -55.8 NC_004688.1 + 7737 0.67 0.801299
Target:  5'- uCUGccAagCUCGCCGGCUACUGggGCGg -3'
miRNA:   3'- -GAC--UagGAGCGGCCGAUGGUgaUGCa -5'
20644 5' -55.8 NC_004688.1 + 418 0.67 0.792082
Target:  5'- aUGAUCgUuucCGCUuccgaccgaaaGGCUACCGCUAUGUc -3'
miRNA:   3'- gACUAGgA---GCGG-----------CCGAUGGUGAUGCA- -5'
20644 5' -55.8 NC_004688.1 + 88675 0.68 0.773206
Target:  5'- uUGG-CCUCGCgGGCUGCacgagaACUGCu- -3'
miRNA:   3'- gACUaGGAGCGgCCGAUGg-----UGAUGca -5'
20644 5' -55.8 NC_004688.1 + 99805 0.68 0.72388
Target:  5'- -cGAUCgUCGCCGGCgaagAUCGCguggaACGa -3'
miRNA:   3'- gaCUAGgAGCGGCCGa---UGGUGa----UGCa -5'
20644 5' -55.8 NC_004688.1 + 89966 0.69 0.682873
Target:  5'- ----aUCUCGCCGGCgACCGCaACGg -3'
miRNA:   3'- gacuaGGAGCGGCCGaUGGUGaUGCa -5'
20644 5' -55.8 NC_004688.1 + 43127 0.69 0.682873
Target:  5'- uUGAUCUUCGCCauGGCguagGCCGCguCGUa -3'
miRNA:   3'- gACUAGGAGCGG--CCGa---UGGUGauGCA- -5'
20644 5' -55.8 NC_004688.1 + 49705 0.7 0.620225
Target:  5'- gUGGUCg-CGCCGGCccACCACcACGUg -3'
miRNA:   3'- gACUAGgaGCGGCCGa-UGGUGaUGCA- -5'
20644 5' -55.8 NC_004688.1 + 1483 0.71 0.599327
Target:  5'- -cGAaaUCCUCGa-GGCUgACCACUACGg -3'
miRNA:   3'- gaCU--AGGAGCggCCGA-UGGUGAUGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.