miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20645 5' -59.5 NC_004688.1 + 99511 0.66 0.706978
Target:  5'- cGGGaAGCGgG-CGGCGgugaaggcgagguAGCCGuaGACCUGc -3'
miRNA:   3'- -CCC-UCGCgUaGCCGU-------------UCGGC--CUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 23080 0.66 0.704981
Target:  5'- aGGGAGCGCGcugCGGCGAugaaugccacguucGCCucguCCUGc -3'
miRNA:   3'- -CCCUCGCGUa--GCCGUU--------------CGGccu-GGAC- -5'
20645 5' -59.5 NC_004688.1 + 84834 0.66 0.677804
Target:  5'- gGGGAgGCcCGUgGGCAuaCCGGugCUGa -3'
miRNA:   3'- -CCCU-CGcGUAgCCGUucGGCCugGAC- -5'
20645 5' -59.5 NC_004688.1 + 42935 0.66 0.677804
Target:  5'- -cGAGCGUugaGGUAGGCCGuuugaaccGACCUGu -3'
miRNA:   3'- ccCUCGCGuagCCGUUCGGC--------CUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 32988 0.67 0.626883
Target:  5'- aGGGAccaGCAggGGUAaucgcGGCCGGACCg- -3'
miRNA:   3'- -CCCUcg-CGUagCCGU-----UCGGCCUGGac -5'
20645 5' -59.5 NC_004688.1 + 24631 0.67 0.596313
Target:  5'- cGGGAGCuCGUCgaggGGCAGGCCcagcacGCCUGc -3'
miRNA:   3'- -CCCUCGcGUAG----CCGUUCGGcc----UGGAC- -5'
20645 5' -59.5 NC_004688.1 + 100208 0.68 0.576051
Target:  5'- uGGGGGCGguCAgcgCGGCGuuGuCCGcGGCCUGg -3'
miRNA:   3'- -CCCUCGC--GUa--GCCGUu-C-GGC-CUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 86567 0.68 0.575042
Target:  5'- cGGAGgaaggccCGCGUCaGCAGguGCCGGGCCg- -3'
miRNA:   3'- cCCUC-------GCGUAGcCGUU--CGGCCUGGac -5'
20645 5' -59.5 NC_004688.1 + 93188 0.68 0.536054
Target:  5'- cGGGuuccGGCGCGggccgcUUGGCGGGCCGaACCUc -3'
miRNA:   3'- -CCC----UCGCGU------AGCCGUUCGGCcUGGAc -5'
20645 5' -59.5 NC_004688.1 + 79612 0.68 0.536054
Target:  5'- ---cGCGUAUCGGCcgcGCCGGcgACCUGc -3'
miRNA:   3'- cccuCGCGUAGCCGuu-CGGCC--UGGAC- -5'
20645 5' -59.5 NC_004688.1 + 30373 0.68 0.536054
Target:  5'- cGGGAGcCGCcgaaGGCGAGCaggugcccacCGGGCUUGa -3'
miRNA:   3'- -CCCUC-GCGuag-CCGUUCG----------GCCUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 15440 0.68 0.536054
Target:  5'- cGGGGCaaauUCGGguGGCCGGAUUUGc -3'
miRNA:   3'- cCCUCGcgu-AGCCguUCGGCCUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 11961 0.69 0.487519
Target:  5'- -uGAGCGCAUgGaGCGAGCaauaGACCUGa -3'
miRNA:   3'- ccCUCGCGUAgC-CGUUCGgc--CUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 66911 0.7 0.44932
Target:  5'- uGGGGCGCAUCGGCAugacggcGGCgGGGu--- -3'
miRNA:   3'- cCCUCGCGUAGCCGU-------UCGgCCUggac -5'
20645 5' -59.5 NC_004688.1 + 29517 0.7 0.441157
Target:  5'- uGGGGCGCuccUUGGCGggAGCCuuGGCCUGg -3'
miRNA:   3'- cCCUCGCGu--AGCCGU--UCGGc-CUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 76884 0.71 0.400797
Target:  5'- cGGGGGCGUcaaauccgggucaggGUCaGGCAgcgGGUCGGGCCg- -3'
miRNA:   3'- -CCCUCGCG---------------UAG-CCGU---UCGGCCUGGac -5'
20645 5' -59.5 NC_004688.1 + 91806 0.73 0.307259
Target:  5'- uGGGcguguucggccccauGGCG-AUCGGCu-GCCGGGCCUGu -3'
miRNA:   3'- -CCC---------------UCGCgUAGCCGuuCGGCCUGGAC- -5'
20645 5' -59.5 NC_004688.1 + 104067 0.73 0.302349
Target:  5'- -cGAGCGCGUCGuucaggaagccgccGCAGGCCuGGGCCUc -3'
miRNA:   3'- ccCUCGCGUAGC--------------CGUUCGG-CCUGGAc -5'
20645 5' -59.5 NC_004688.1 + 98647 0.76 0.202688
Target:  5'- cGGGAGCGCGUUGGCAccuGCCaGGCa-- -3'
miRNA:   3'- -CCCUCGCGUAGCCGUu--CGGcCUGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.