miRNA: 3'- uaCAGUUCAcuUGCCCCGGCUcuuuc -5'
miRNA: 3'- uacagUUCACUUGCC------CCGGCUCUUuc -5'
miRNA: 3'- -UAC--AGUUCACUU------------GCCCCGGCUCUuuc -5'
miRNA: 3'- uaCAGUUC-ACU--UGCCCCGGC--------UCUUUC- -5'
miRNA: 3'- uacAGUUCACUUg------CCCCGGCUCUUUc -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20646 | 3' | -52.1 | NC_004688.1 | + | 46716 | 0.67 | 0.925286 |
|
Target: 5'- -gGUCGGGUcuGCGGGGCUGAa---- -3' miRNA: 3'- uaCAGUUCAcuUGCCCCGGCUcuuuc -5' |
|||||||
| 20646 | 3' | -52.1 | NC_004688.1 | + | 34416 | 0.67 | 0.91945 |
|
Target: 5'- ----aAGGUGAGCGGgaacgcGGCCGAGAGc- -3' miRNA: 3'- uacagUUCACUUGCC------CCGGCUCUUuc -5' |
|||||||
| 20646 | 3' | -52.1 | NC_004688.1 | + | 20715 | 0.68 | 0.886314 |
|
Target: 5'- cGUGgaUCAGGUGAGgcaucccgcuauCGGGGUCGAGGu-- -3' miRNA: 3'- -UAC--AGUUCACUU------------GCCCCGGCUCUuuc -5' |
|||||||
| 20646 | 3' | -52.1 | NC_004688.1 | + | 94670 | 0.74 | 0.582486 |
|
Target: 5'- -cGUCGAGcUGGcgGCGGGGCCGugcgcagcGGGAAGg -3' miRNA: 3'- uaCAGUUC-ACU--UGCCCCGGC--------UCUUUC- -5' |
|||||||
| 20646 | 3' | -52.1 | NC_004688.1 | + | 68074 | 0.76 | 0.478381 |
|
Target: 5'- --aUCAAGUGAGuggguuaGGGGCCGAGAAGu -3' miRNA: 3'- uacAGUUCACUUg------CCCCGGCUCUUUc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home