Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 98958 | 0.76 | 0.766003 |
Target: 5'- aGuaAUGUGGGGGggGUAcuAUCCGUa -3' miRNA: 3'- gCcgUACAUUCCCuuCAUuuUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 81063 | 0.66 | 0.998823 |
Target: 5'- aGGCcgGUcagcgggaauuaaAAGuGGAGGUAGAcauuggcGCCaCGCa -3' miRNA: 3'- gCCGuaCA-------------UUC-CCUUCAUUU-------UGG-GCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 11847 | 0.66 | 0.998622 |
Target: 5'- gGGCGUaUAAcuaaucGAAGUAGGGCCCGUu -3' miRNA: 3'- gCCGUAcAUUcc----CUUCAUUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 108520 | 0.67 | 0.997121 |
Target: 5'- gCGGgGgauacAGGGGAG-AAGGCCUGCg -3' miRNA: 3'- -GCCgUacau-UCCCUUCaUUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 124534 | 0.68 | 0.9901 |
Target: 5'- gGGCGcg-GGGGGAGGagcccCCCGCa -3' miRNA: 3'- gCCGUacaUUCCCUUCauuuuGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 105872 | 0.69 | 0.985338 |
Target: 5'- gGGCGacaGGGGGAcgcgGGUcuuGGGGCCCGCg -3' miRNA: 3'- gCCGUacaUUCCCU----UCA---UUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 23696 | 0.69 | 0.983414 |
Target: 5'- uGGCGauuucuGGGgcGUcAAAACCCGCa -3' miRNA: 3'- gCCGUacauu-CCCuuCA-UUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 121757 | 0.71 | 0.96059 |
Target: 5'- cCGGCGcGUuucgguGGGAAGUGAAACUacagGCa -3' miRNA: 3'- -GCCGUaCAuu----CCCUUCAUUUUGGg---CG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 65933 | 0.72 | 0.933251 |
Target: 5'- uGGUggGUGAGGaGggGUAAAGgCaCGCu -3' miRNA: 3'- gCCGuaCAUUCC-CuuCAUUUUgG-GCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 90607 | 0.74 | 0.881794 |
Target: 5'- aGGCAUG--GGGGGAGUGuu-UCUGCg -3' miRNA: 3'- gCCGUACauUCCCUUCAUuuuGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 446 | 0.69 | 0.987087 |
Target: 5'- gCGGCuucUGUAAGGGggGggcGcgUCUGCc -3' miRNA: 3'- -GCCGu--ACAUUCCCuuCau-UuuGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 105258 | 0.68 | 0.9901 |
Target: 5'- gGGCGcg-GGGGGAGGagcccCCCGCa -3' miRNA: 3'- gCCGUacaUUCCCUUCauuuuGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 51770 | 0.68 | 0.991384 |
Target: 5'- aCGuaAUGUcaGGGGGGAGUAcuGCCCc- -3' miRNA: 3'- -GCcgUACA--UUCCCUUCAUuuUGGGcg -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 249 | 0.67 | 0.995264 |
Target: 5'- aGGC-UGgcGGGGggGgguuuCCCGg -3' miRNA: 3'- gCCGuACauUCCCuuCauuuuGGGCg -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 123919 | 0.67 | 0.995969 |
Target: 5'- gGGCGacaGGGGGAcgcgGGUcuuGGGGCCCGCc -3' miRNA: 3'- gCCGUacaUUCCCU----UCA---UUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 115172 | 0.67 | 0.996225 |
Target: 5'- cCGGCAcgaagaucaagcauaUGUugaaacAGGGAGGUAccGGACCCu- -3' miRNA: 3'- -GCCGU---------------ACAu-----UCCCUUCAU--UUUGGGcg -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 46405 | 0.67 | 0.996585 |
Target: 5'- gCGGCAUGgcguucuGGAGcGUAcacgcaucgaAGGCCCGCu -3' miRNA: 3'- -GCCGUACauuc---CCUU-CAU----------UUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 121272 | 0.67 | 0.997121 |
Target: 5'- gCGGgGgauacAGGGGAG-AAGGCCUGCg -3' miRNA: 3'- -GCCgUacau-UCCCUUCaUUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 84517 | 0.66 | 0.998329 |
Target: 5'- cCGGCGUGUAuaaAGGGAuuauaauuuaAGUc---CCCGg -3' miRNA: 3'- -GCCGUACAU---UCCCU----------UCAuuuuGGGCg -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 103267 | 1.14 | 0.006379 |
Target: 5'- uCGGCAUGUAAGGGAAGUAAAACCCGCa -3' miRNA: 3'- -GCCGUACAUUCCCUUCAUUUUGGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home