miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2066 5' -58.7 NC_001348.1 + 118675 0.66 0.763962
Target:  5'- cGGGGauGGGUgCAAcACCCCgUCC-CCa -3'
miRNA:   3'- -CCCC--CUCAgGUUaUGGGGgAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 111117 0.66 0.763962
Target:  5'- cGGGGauGGGUgCAAcACCCCgUCC-CCa -3'
miRNA:   3'- -CCCC--CUCAgGUUaUGGGGgAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 107231 0.66 0.761139
Target:  5'- uGGGGGAGagcCCAGaggGCCUCCcccguggccauggcUUCGCCUa -3'
miRNA:   3'- -CCCCCUCa--GGUUa--UGGGGG--------------AGGUGGA- -5'
2066 5' -58.7 NC_001348.1 + 122561 0.66 0.761139
Target:  5'- uGGGGGAGagcCCAGaggGCCUCCcccguggccauggcUUCGCCUa -3'
miRNA:   3'- -CCCCCUCa--GGUUa--UGGGGG--------------AGGUGGA- -5'
2066 5' -58.7 NC_001348.1 + 5469 0.66 0.744955
Target:  5'- cGGGGAG-CCGuu-CUUCCUCCGCg- -3'
miRNA:   3'- cCCCCUCaGGUuauGGGGGAGGUGga -5'
2066 5' -58.7 NC_001348.1 + 12550 0.67 0.705849
Target:  5'- cGGGGuuccGUUCGAUugCCUagUCCACCa -3'
miRNA:   3'- cCCCCu---CAGGUUAugGGGg-AGGUGGa -5'
2066 5' -58.7 NC_001348.1 + 32500 0.68 0.655653
Target:  5'- cGGGGGAGU--AAUACCCCaucuugaaUCCAUa- -3'
miRNA:   3'- -CCCCCUCAggUUAUGGGGg-------AGGUGga -5'
2066 5' -58.7 NC_001348.1 + 51759 0.68 0.625245
Target:  5'- gGGGGGAGUac--UGCCCCCUCgugauuuuCAUCa -3'
miRNA:   3'- -CCCCCUCAgguuAUGGGGGAG--------GUGGa -5'
2066 5' -58.7 NC_001348.1 + 119954 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 109892 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 109865 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 119873 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 109838 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 119900 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 119927 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 119981 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 109811 0.68 0.615109
Target:  5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3'
miRNA:   3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5'
2066 5' -58.7 NC_001348.1 + 43998 0.69 0.601952
Target:  5'- uGGGGAucuUCCAAUauuugauccacaacGCCCCC-CCGCCc -3'
miRNA:   3'- cCCCCUc--AGGUUA--------------UGGGGGaGGUGGa -5'
2066 5' -58.7 NC_001348.1 + 11239 0.69 0.594882
Target:  5'- cGGGGGGUCCuacgACCacaCUUCGCCg -3'
miRNA:   3'- cCCCCUCAGGuua-UGGgg-GAGGUGGa -5'
2066 5' -58.7 NC_001348.1 + 80 0.69 0.560771
Target:  5'- cGGGGGGGaugggauuuuuugCCGGgaaACCCCCccCCGCCa -3'
miRNA:   3'- -CCCCCUCa------------GGUUa--UGGGGGa-GGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.