miRNA display CGI

Results 1 - 12 of 12 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20661	3'	-59.2	NC_004688.1	+	36083	0.66	0.710825
	Target:  5'- gGUGGGGGuuuggacgccgagcuCGuuccagucgaaggugUCCGCCAGGUGGcCGa -3' miRNA:   3'- gCACCCCCu--------------GC---------------AGGCGGUUUACCcGC- -5'
20661	3'	-59.2	NC_004688.1	+	96976	0.66	0.705874
	Target:  5'- gCGUGGcGGcGAaagccUCCGCCAAggccuccccGUGGGCu -3' miRNA:   3'- -GCACC-CC-CUgc---AGGCGGUU---------UACCCGc -5'
20661	3'	-59.2	NC_004688.1	+	11579	0.66	0.705874
	Target:  5'- aGUGGGGGcGCGcagCGCCAuccgGAUacaGGGCGc -3' miRNA:   3'- gCACCCCC-UGCag-GCGGU----UUA---CCCGC- -5'
20661	3'	-59.2	NC_004688.1	+	23150	0.67	0.675879
	Target:  5'- aGUGGGGGcGCGUCUGgCCGAcgGuuaccacGCGa -3' miRNA:   3'- gCACCCCC-UGCAGGC-GGUUuaCc------CGC- -5'
20661	3'	-59.2	NC_004688.1	+	31019	0.67	0.655693
	Target:  5'- --cGGGcGccCGUCgGCCGAGUGGGCc -3' miRNA:   3'- gcaCCC-CcuGCAGgCGGUUUACCCGc -5'
20661	3'	-59.2	NC_004688.1	+	9279	0.67	0.635433
	Target:  5'- aCGUGuGGGGAgcagGUCCacacgGCCGAucUGGGCa -3' miRNA:   3'- -GCAC-CCCCUg---CAGG-----CGGUUu-ACCCGc -5'
20661	3'	-59.2	NC_004688.1	+	63503	0.69	0.544972
	Target:  5'- -uUGGcGGACGUCCcCCAcgacGUGGGCGc -3' miRNA:   3'- gcACCcCCUGCAGGcGGUu---UACCCGC- -5'
20661	3'	-59.2	NC_004688.1	+	71168	0.7	0.477563
	Target:  5'- -uUGGGGGugGgCCGuCCGGcgGGGUu -3' miRNA:   3'- gcACCCCCugCaGGC-GGUUuaCCCGc -5'
20661	3'	-59.2	NC_004688.1	+	91165	0.73	0.341472
	Target:  5'- gGUGGGGGAa--UCGCCcauUGGGCGg -3' miRNA:   3'- gCACCCCCUgcaGGCGGuuuACCCGC- -5'
20661	3'	-59.2	NC_004688.1	+	47142	0.73	0.333952
	Target:  5'- cCGUGGaGcGGGCcUCCGCCAGGUauucgaGGGCGu -3' miRNA:   3'- -GCACC-C-CCUGcAGGCGGUUUA------CCCGC- -5'
20661	3'	-59.2	NC_004688.1	+	79258	0.75	0.253201
	Target:  5'- gGUGGGGGGCG-CCGa-AGAUGGcGCGg -3' miRNA:   3'- gCACCCCCUGCaGGCggUUUACC-CGC- -5'
20661	3'	-59.2	NC_004688.1	+	76871	0.76	0.208791
	Target:  5'- aCGUGGGGGGCGUCgggggCGUCAAAUccGGGUc -3' miRNA:   3'- -GCACCCCCUGCAG-----GCGGUUUA--CCCGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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