Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20661 | 5' | -57.4 | NC_004688.1 | + | 110428 | 0.66 | 0.771096 |
Target: 5'- aGCGCUCucgCUcgcgcgccuuacGGCAGGcguCGCCCGu- -3' miRNA: 3'- aCGCGAGua-GA------------CCGUCUu--GCGGGCua -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 54381 | 0.66 | 0.761379 |
Target: 5'- aGCGCUgCAg--GGuCAGGGCGCgCCGGc -3' miRNA: 3'- aCGCGA-GUagaCC-GUCUUGCG-GGCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 31710 | 0.66 | 0.761379 |
Target: 5'- gGCGCgc--CUGGUuguAGAGCGCgCCGAc -3' miRNA: 3'- aCGCGaguaGACCG---UCUUGCG-GGCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 16928 | 0.66 | 0.741591 |
Target: 5'- gUGUGCUCAUCccGGUAGAuccucaGCGCCa--- -3' miRNA: 3'- -ACGCGAGUAGa-CCGUCU------UGCGGgcua -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 42372 | 0.66 | 0.731541 |
Target: 5'- gGCGCUCAaaaaguauuUCc-GCAGAugcuCGCCCGGa -3' miRNA: 3'- aCGCGAGU---------AGacCGUCUu---GCGGGCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 65241 | 0.66 | 0.7214 |
Target: 5'- cGCGCUCAaCccagGGgGGAACGuCCUGGg -3' miRNA: 3'- aCGCGAGUaGa---CCgUCUUGC-GGGCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 8629 | 0.67 | 0.711178 |
Target: 5'- aGCGCUCAUUgguggGGCcucuaauGGGCGCCaUGAa -3' miRNA: 3'- aCGCGAGUAGa----CCGu------CUUGCGG-GCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 60568 | 0.67 | 0.672815 |
Target: 5'- cUGCGCUCAacgccuggcggguguUUUGGCAGugacgcaGACGCUgGAg -3' miRNA: 3'- -ACGCGAGU---------------AGACCGUC-------UUGCGGgCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 16110 | 0.67 | 0.659198 |
Target: 5'- cUGCGUUCAUCUGGuCAuAGCGagaCUGAa -3' miRNA: 3'- -ACGCGAGUAGACC-GUcUUGCg--GGCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 26950 | 0.69 | 0.575267 |
Target: 5'- gGCcuGUUUAuccuUCUGGguGAGCGCCUGGUg -3' miRNA: 3'- aCG--CGAGU----AGACCguCUUGCGGGCUA- -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 75255 | 0.69 | 0.564888 |
Target: 5'- gGCcUUCAUCUGGCgAGcAACGCCgGAg -3' miRNA: 3'- aCGcGAGUAGACCG-UC-UUGCGGgCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 91153 | 0.69 | 0.564888 |
Target: 5'- gUGCGCgUAUCUGGUgggGGAAuCGCCCa-- -3' miRNA: 3'- -ACGCGaGUAGACCG---UCUU-GCGGGcua -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 34722 | 0.69 | 0.554557 |
Target: 5'- uUGCGaCUuuuccaugcaCGUCgGGCAGGACGCCCu-- -3' miRNA: 3'- -ACGC-GA----------GUAGaCCGUCUUGCGGGcua -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 24849 | 0.69 | 0.542237 |
Target: 5'- gGCGCUCAUagaaucgauugaUGGC-GAGCGCCuCGGg -3' miRNA: 3'- aCGCGAGUAg-----------ACCGuCUUGCGG-GCUa -5' |
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20661 | 5' | -57.4 | NC_004688.1 | + | 12204 | 0.7 | 0.503875 |
Target: 5'- cGCGCcCcgagagGUCUGGaCGGAcGCGCCCGAc -3' miRNA: 3'- aCGCGaG------UAGACC-GUCU-UGCGGGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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