miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2067 3' -53 NC_001348.1 + 30038 0.66 0.944488
Target:  5'- ------cCUGCACGGCu-CCuuGGACc -3'
miRNA:   3'- uaacuuaGACGUGUCGuuGGggCCUG- -5'
2067 3' -53 NC_001348.1 + 81295 0.66 0.944488
Target:  5'- -cUGuGGUCUGCuuCAGCGAauuugcuuCCCCGaGACa -3'
miRNA:   3'- uaAC-UUAGACGu-GUCGUU--------GGGGC-CUG- -5'
2067 3' -53 NC_001348.1 + 106260 0.66 0.944015
Target:  5'- --cGggUCg--ACAGUAauaaaacGCCCCGGGCg -3'
miRNA:   3'- uaaCuuAGacgUGUCGU-------UGGGGCCUG- -5'
2067 3' -53 NC_001348.1 + 123532 0.66 0.944015
Target:  5'- --cGggUCg--ACAGUAauaaaacGCCCCGGGCg -3'
miRNA:   3'- uaaCuuAGacgUGUCGU-------UGGGGCCUG- -5'
2067 3' -53 NC_001348.1 + 111454 0.66 0.928625
Target:  5'- -aUGAAucUCUGCggaucccGCGGUgAGCaCCCGGGCg -3'
miRNA:   3'- uaACUU--AGACG-------UGUCG-UUG-GGGCCUG- -5'
2067 3' -53 NC_001348.1 + 118338 0.66 0.928625
Target:  5'- -aUGAAucUCUGCggaucccGCGGUgAGCaCCCGGGCg -3'
miRNA:   3'- uaACUU--AGACG-------UGUCG-UUG-GGGCCUG- -5'
2067 3' -53 NC_001348.1 + 11704 0.67 0.911478
Target:  5'- uUUGugcCUGCAUGGCGGCUacgcgCCGGACc -3'
miRNA:   3'- uAACuuaGACGUGUCGUUGG-----GGCCUG- -5'
2067 3' -53 NC_001348.1 + 22010 0.69 0.844621
Target:  5'- -aUGGAUaUGCACAGCAGCCacuguuCCGGu- -3'
miRNA:   3'- uaACUUAgACGUGUCGUUGG------GGCCug -5'
2067 3' -53 NC_001348.1 + 110556 0.69 0.828117
Target:  5'- -aUGGAUCUGCACcaggaccccugaacGGCcgggauacgucgcggGGCCCCGGcGCg -3'
miRNA:   3'- uaACUUAGACGUG--------------UCG---------------UUGGGGCC-UG- -5'
2067 3' -53 NC_001348.1 + 119236 0.69 0.828117
Target:  5'- -aUGGAUCUGCACcaggaccccugaacGGCcgggauacgucgcggGGCCCCGGcGCg -3'
miRNA:   3'- uaACUUAGACGUG--------------UCG---------------UUGGGGCC-UG- -5'
2067 3' -53 NC_001348.1 + 102738 0.7 0.799684
Target:  5'- uAUUGuAUUUGCAgAGCAggauGCCCCGGu- -3'
miRNA:   3'- -UAACuUAGACGUgUCGU----UGGGGCCug -5'
2067 3' -53 NC_001348.1 + 96392 0.71 0.74033
Target:  5'- -aUGAAcauUUUGgGCAGCAACCCUGGu- -3'
miRNA:   3'- uaACUU---AGACgUGUCGUUGGGGCCug -5'
2067 3' -53 NC_001348.1 + 103907 1.07 0.004675
Target:  5'- gAUUGAAUCUGCACAGCAACCCCGGACc -3'
miRNA:   3'- -UAACUUAGACGUGUCGUUGGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.