miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20670 5' -63 NC_004688.1 + 90269 0.66 0.533316
Target:  5'- uGGCcgacGuCAGCGAGGcuGuGCAGCGGCu -3'
miRNA:   3'- gCCGc---C-GUCGCUCUucC-CGUCGCCGc -5'
20670 5' -63 NC_004688.1 + 99519 0.66 0.504613
Target:  5'- gGGCGGCGGUGaAGgcGaGGUAGCcGUa -3'
miRNA:   3'- gCCGCCGUCGC-UCuuC-CCGUCGcCGc -5'
20670 5' -63 NC_004688.1 + 92399 0.66 0.504613
Target:  5'- uGGCGGuCAGUGGGc--GGaAGCGGCa -3'
miRNA:   3'- gCCGCC-GUCGCUCuucCCgUCGCCGc -5'
20670 5' -63 NC_004688.1 + 105134 0.66 0.495193
Target:  5'- gGGUGacGCGGCc-GAGGGGCGGCaGCa -3'
miRNA:   3'- gCCGC--CGUCGcuCUUCCCGUCGcCGc -5'
20670 5' -63 NC_004688.1 + 26789 0.66 0.485853
Target:  5'- gCGGUGGCcGCgGAGcuuGAGGGCucugaucCGGCGa -3'
miRNA:   3'- -GCCGCCGuCG-CUC---UUCCCGuc-----GCCGC- -5'
20670 5' -63 NC_004688.1 + 68867 0.66 0.476598
Target:  5'- gGGCGGCGGgGucgccgguccGGAcguAGuGGUAGCcGGCGa -3'
miRNA:   3'- gCCGCCGUCgC----------UCU---UC-CCGUCG-CCGC- -5'
20670 5' -63 NC_004688.1 + 104338 0.67 0.467431
Target:  5'- gGGCGuGCGGUaGAGGaucAGGGC-GCGaGCGc -3'
miRNA:   3'- gCCGC-CGUCG-CUCU---UCCCGuCGC-CGC- -5'
20670 5' -63 NC_004688.1 + 13827 0.67 0.458356
Target:  5'- uGGCaGGCGGCGAuaucguagguGGAGaaaggcuuGGUGGUGGCGa -3'
miRNA:   3'- gCCG-CCGUCGCU----------CUUC--------CCGUCGCCGC- -5'
20670 5' -63 NC_004688.1 + 93244 0.67 0.449375
Target:  5'- uCGGCGGCaacaucgucGGCGcGAucGGcGCGGCcGGCGc -3'
miRNA:   3'- -GCCGCCG---------UCGCuCUu-CC-CGUCG-CCGC- -5'
20670 5' -63 NC_004688.1 + 71091 0.67 0.440493
Target:  5'- -uGCGGgGGUGAGGagugcgAGGGUgagGGCGGCu -3'
miRNA:   3'- gcCGCCgUCGCUCU------UCCCG---UCGCCGc -5'
20670 5' -63 NC_004688.1 + 93002 0.68 0.373244
Target:  5'- aGuGCGGCGGCGA---GGGC-GCGuGCGg -3'
miRNA:   3'- gC-CGCCGUCGCUcuuCCCGuCGC-CGC- -5'
20670 5' -63 NC_004688.1 + 52520 0.69 0.365342
Target:  5'- -cGUGGCAGCaaaaGAuGAAGGGCuucagcaagcuGCGGCGa -3'
miRNA:   3'- gcCGCCGUCG----CU-CUUCCCGu----------CGCCGC- -5'
20670 5' -63 NC_004688.1 + 87705 0.69 0.356784
Target:  5'- gGGCGGCcggagagAGgGAuuGGAGGGCcuCGGCGa -3'
miRNA:   3'- gCCGCCG-------UCgCU--CUUCCCGucGCCGC- -5'
20670 5' -63 NC_004688.1 + 94185 0.69 0.342336
Target:  5'- -uGCGGUAGgGuu-GGGGCAucGCGGCGg -3'
miRNA:   3'- gcCGCCGUCgCucuUCCCGU--CGCCGC- -5'
20670 5' -63 NC_004688.1 + 110021 0.69 0.332696
Target:  5'- gCGGUguGGCAGCGGGAcgGGaaugccuuuuuucaGGCAGuCGGCa -3'
miRNA:   3'- -GCCG--CCGUCGCUCU--UC--------------CCGUC-GCCGc -5'
20670 5' -63 NC_004688.1 + 99962 0.71 0.266483
Target:  5'- uGGUGGCAGUGAccugcguGAuaccGGCGGUGGCGc -3'
miRNA:   3'- gCCGCCGUCGCU-------CUuc--CCGUCGCCGC- -5'
20670 5' -63 NC_004688.1 + 91619 0.72 0.226555
Target:  5'- gCGGUGGaCGGaGAuGAAcGGCAGCGGCGa -3'
miRNA:   3'- -GCCGCC-GUCgCU-CUUcCCGUCGCCGC- -5'
20670 5' -63 NC_004688.1 + 7977 0.72 0.226015
Target:  5'- gGGCGGCgaccuaagcaAGCGGGc-GGGCaagguuuGGCGGCGg -3'
miRNA:   3'- gCCGCCG----------UCGCUCuuCCCG-------UCGCCGC- -5'
20670 5' -63 NC_004688.1 + 103430 0.73 0.177783
Target:  5'- aCGGUGuCGGCGAGAAGGGUgacGCaGGCGu -3'
miRNA:   3'- -GCCGCcGUCGCUCUUCCCGu--CG-CCGC- -5'
20670 5' -63 NC_004688.1 + 107747 0.77 0.102047
Target:  5'- gCGGCGGCAGCGGGccacGGaGCcaucugcggaAGCGGCGa -3'
miRNA:   3'- -GCCGCCGUCGCUCuu--CC-CG----------UCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.