Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20672 | 3' | -51 | NC_004688.1 | + | 60777 | 0.66 | 0.976634 |
Target: 5'- cUGGAGCUGgCCAgCAu-CGGGu---- -3' miRNA: 3'- -ACCUCGACgGGUgGUuuGCCUuuuug -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 91276 | 0.66 | 0.976634 |
Target: 5'- cGGAcaagGuCUGCagaaCCugCAAACGGAGAAGg -3' miRNA: 3'- aCCU----C-GACG----GGugGUUUGCCUUUUUg -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 86040 | 0.66 | 0.976634 |
Target: 5'- --aGGUUGUCCGCCAAGcCGGcuAGGCc -3' miRNA: 3'- accUCGACGGGUGGUUU-GCCuuUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 67943 | 0.66 | 0.970968 |
Target: 5'- gUGGGGaccguuCUGUCCAgCGAGCGGAc---- -3' miRNA: 3'- -ACCUC------GACGGGUgGUUUGCCUuuuug -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 69242 | 0.66 | 0.970661 |
Target: 5'- gGGAGUUgGCgCCGCCGccCGGAccgugguGGAACg -3' miRNA: 3'- aCCUCGA-CG-GGUGGUuuGCCU-------UUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 59517 | 0.66 | 0.967461 |
Target: 5'- cGGuccuaccGGCUGCUCGCCGAAUugguagccgaGGuuGAGCg -3' miRNA: 3'- aCC-------UCGACGGGUGGUUUG----------CCuuUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 61900 | 0.67 | 0.965772 |
Target: 5'- gUGGAGaUGCUcggcgucgacguggaCACCGucaaacgcuGGCGGAAGAACg -3' miRNA: 3'- -ACCUCgACGG---------------GUGGU---------UUGCCUUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 39715 | 0.67 | 0.964377 |
Target: 5'- gGGGGCgcGUCCAgCCAuuCGGcuAGACg -3' miRNA: 3'- aCCUCGa-CGGGU-GGUuuGCCuuUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 75278 | 0.67 | 0.964377 |
Target: 5'- cGGAGcCUGCgUucuCCAuGCGGAAAAu- -3' miRNA: 3'- aCCUC-GACGgGu--GGUuUGCCUUUUug -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 108071 | 0.67 | 0.956804 |
Target: 5'- -uGAGCgUGCgCACCAagAACGGGAugguGGCg -3' miRNA: 3'- acCUCG-ACGgGUGGU--UUGCCUUu---UUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 60277 | 0.67 | 0.956399 |
Target: 5'- aGGAGUgcaaccgUGCCUgggGCCAugccuGCGGGAAAGa -3' miRNA: 3'- aCCUCG-------ACGGG---UGGUu----UGCCUUUUUg -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 79882 | 0.67 | 0.955581 |
Target: 5'- cGGGGCcuucgucgcccuucUGCCCGCUguGGAC-GAAGAACu -3' miRNA: 3'- aCCUCG--------------ACGGGUGG--UUUGcCUUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 85803 | 0.67 | 0.952203 |
Target: 5'- cGGGGaCUGCCCuggagccGCCAucgcGACugGGGAAGGCc -3' miRNA: 3'- aCCUC-GACGGG-------UGGU----UUG--CCUUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 58465 | 0.67 | 0.948202 |
Target: 5'- gGGAGUUGUaCgACgGGcacGCGGAGAAGCg -3' miRNA: 3'- aCCUCGACG-GgUGgUU---UGCCUUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 110179 | 0.67 | 0.948202 |
Target: 5'- aGGGGCUGCCguCCAcAUGagccgcccGGAGGGCg -3' miRNA: 3'- aCCUCGACGGguGGUuUGC--------CUUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 39416 | 0.68 | 0.943503 |
Target: 5'- aGGcGC-GCCCACUu-ACGGAGAuaAGCa -3' miRNA: 3'- aCCuCGaCGGGUGGuuUGCCUUU--UUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 85416 | 0.68 | 0.943503 |
Target: 5'- cGGGGUUGCCCccgacgauccGCCGAACGcgccGGGGCc -3' miRNA: 3'- aCCUCGACGGG----------UGGUUUGCcu--UUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 94684 | 0.68 | 0.943503 |
Target: 5'- cGGGGCcGUgCGCa--GCGGGAAGGCa -3' miRNA: 3'- aCCUCGaCGgGUGguuUGCCUUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 96960 | 0.68 | 0.943503 |
Target: 5'- uUGGcGCUGCCgCACagcguGGCGGcGAAAGCc -3' miRNA: 3'- -ACCuCGACGG-GUGgu---UUGCC-UUUUUG- -5' |
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20672 | 3' | -51 | NC_004688.1 | + | 93112 | 0.68 | 0.943503 |
Target: 5'- gGGGGCcGCCCGC--GGCGGcgcuuAGGAGCg -3' miRNA: 3'- aCCUCGaCGGGUGguUUGCC-----UUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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