miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20672 3' -51 NC_004688.1 + 7351 0.68 0.938535
Target:  5'- gGGAcaUGCUCACCGGcuACGuGGAGAGCg -3'
miRNA:   3'- aCCUcgACGGGUGGUU--UGC-CUUUUUG- -5'
20672 3' -51 NC_004688.1 + 10835 0.73 0.723705
Target:  5'- gGGuGGUUGCCC-CCAucccCGGGAAAACa -3'
miRNA:   3'- aCC-UCGACGGGuGGUuu--GCCUUUUUG- -5'
20672 3' -51 NC_004688.1 + 24895 0.72 0.785156
Target:  5'- gGaGAGUUGCgCCGCCGuaacaAACGGGAcGACa -3'
miRNA:   3'- aC-CUCGACG-GGUGGU-----UUGCCUUuUUG- -5'
20672 3' -51 NC_004688.1 + 30387 0.69 0.902997
Target:  5'- gGcGAGCaggUGCCCACCGGGCuuGAGGACc -3'
miRNA:   3'- aC-CUCG---ACGGGUGGUUUGccUUUUUG- -5'
20672 3' -51 NC_004688.1 + 39416 0.68 0.943503
Target:  5'- aGGcGC-GCCCACUu-ACGGAGAuaAGCa -3'
miRNA:   3'- aCCuCGaCGGGUGGuuUGCCUUU--UUG- -5'
20672 3' -51 NC_004688.1 + 39715 0.67 0.964377
Target:  5'- gGGGGCgcGUCCAgCCAuuCGGcuAGACg -3'
miRNA:   3'- aCCUCGa-CGGGU-GGUuuGCCuuUUUG- -5'
20672 3' -51 NC_004688.1 + 43805 0.75 0.604294
Target:  5'- aUGGAGaccgugGCCCACCAAGCaGGAcgGCu -3'
miRNA:   3'- -ACCUCga----CGGGUGGUUUGcCUUuuUG- -5'
20672 3' -51 NC_004688.1 + 47144 0.71 0.835697
Target:  5'- gUGGAGCggGCCUccGCCAGguauucgagggcguuGCGGAucAACg -3'
miRNA:   3'- -ACCUCGa-CGGG--UGGUU---------------UGCCUuuUUG- -5'
20672 3' -51 NC_004688.1 + 52585 0.7 0.840959
Target:  5'- gGGuaGGUUGCCCACUAu-CGGAAAGu- -3'
miRNA:   3'- aCC--UCGACGGGUGGUuuGCCUUUUug -5'
20672 3' -51 NC_004688.1 + 52941 0.76 0.528902
Target:  5'- cGGGGCUGCUgGCCuguGGCGGuguAGGCg -3'
miRNA:   3'- aCCUCGACGGgUGGu--UUGCCuu-UUUG- -5'
20672 3' -51 NC_004688.1 + 58465 0.67 0.948202
Target:  5'- gGGAGUUGUaCgACgGGcacGCGGAGAAGCg -3'
miRNA:   3'- aCCUCGACG-GgUGgUU---UGCCUUUUUG- -5'
20672 3' -51 NC_004688.1 + 59517 0.66 0.967461
Target:  5'- cGGuccuaccGGCUGCUCGCCGAAUugguagccgaGGuuGAGCg -3'
miRNA:   3'- aCC-------UCGACGGGUGGUUUG----------CCuuUUUG- -5'
20672 3' -51 NC_004688.1 + 59815 0.71 0.829462
Target:  5'- aUGGAucggugaccgcacaGCUGCCCGCUgggugucgGGAUGGAgcGAGACa -3'
miRNA:   3'- -ACCU--------------CGACGGGUGG--------UUUGCCU--UUUUG- -5'
20672 3' -51 NC_004688.1 + 60277 0.67 0.956399
Target:  5'- aGGAGUgcaaccgUGCCUgggGCCAugccuGCGGGAAAGa -3'
miRNA:   3'- aCCUCG-------ACGGG---UGGUu----UGCCUUUUUg -5'
20672 3' -51 NC_004688.1 + 60777 0.66 0.976634
Target:  5'- cUGGAGCUGgCCAgCAu-CGGGu---- -3'
miRNA:   3'- -ACCUCGACgGGUgGUuuGCCUuuuug -5'
20672 3' -51 NC_004688.1 + 61900 0.67 0.965772
Target:  5'- gUGGAGaUGCUcggcgucgacguggaCACCGucaaacgcuGGCGGAAGAACg -3'
miRNA:   3'- -ACCUCgACGG---------------GUGGU---------UUGCCUUUUUG- -5'
20672 3' -51 NC_004688.1 + 67943 0.66 0.970968
Target:  5'- gUGGGGaccguuCUGUCCAgCGAGCGGAc---- -3'
miRNA:   3'- -ACCUC------GACGGGUgGUUUGCCUuuuug -5'
20672 3' -51 NC_004688.1 + 69242 0.66 0.970661
Target:  5'- gGGAGUUgGCgCCGCCGccCGGAccgugguGGAACg -3'
miRNA:   3'- aCCUCGA-CG-GGUGGUuuGCCU-------UUUUG- -5'
20672 3' -51 NC_004688.1 + 75278 0.67 0.964377
Target:  5'- cGGAGcCUGCgUucuCCAuGCGGAAAAu- -3'
miRNA:   3'- aCCUC-GACGgGu--GGUuUGCCUUUUug -5'
20672 3' -51 NC_004688.1 + 76950 0.69 0.888993
Target:  5'- aGGAGC-GCcauugCCGCCGGACuGAAAGGCc -3'
miRNA:   3'- aCCUCGaCG-----GGUGGUUUGcCUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.