miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20672 5' -52.8 NC_004688.1 + 29891 0.66 0.958511
Target:  5'- aGCGCUguGCCccauccCugCCACugcuucGCAGCUuCCg -3'
miRNA:   3'- -CGCGA--UGGa-----GugGGUGuu----UGUCGA-GG- -5'
20672 5' -52.8 NC_004688.1 + 24046 0.66 0.958511
Target:  5'- uCGCUggaaGCCgUCACCCGgaucguccCGAACGGgaCCg -3'
miRNA:   3'- cGCGA----UGG-AGUGGGU--------GUUUGUCgaGG- -5'
20672 5' -52.8 NC_004688.1 + 84611 0.66 0.958511
Target:  5'- uUGUUGCCUUgACCCGC-GGCGGUUUg -3'
miRNA:   3'- cGCGAUGGAG-UGGGUGuUUGUCGAGg -5'
20672 5' -52.8 NC_004688.1 + 65272 0.66 0.958511
Target:  5'- aGCGCggGCCUCGUCUAUggGgAGCUg- -3'
miRNA:   3'- -CGCGa-UGGAGUGGGUGuuUgUCGAgg -5'
20672 5' -52.8 NC_004688.1 + 19304 0.66 0.958126
Target:  5'- gGCGUgggacauCUUCGCCCaccagucGCAGACGGaCUUCg -3'
miRNA:   3'- -CGCGau-----GGAGUGGG-------UGUUUGUC-GAGG- -5'
20672 5' -52.8 NC_004688.1 + 104301 0.66 0.954558
Target:  5'- aGCGCUGgga-GCCCACGAucgcccACGGC-CCg -3'
miRNA:   3'- -CGCGAUggagUGGGUGUU------UGUCGaGG- -5'
20672 5' -52.8 NC_004688.1 + 22917 0.66 0.950788
Target:  5'- aGCGCguaucACUUCAaucucgaauccgcgaCCGCAGGCccGCUCCa -3'
miRNA:   3'- -CGCGa----UGGAGUg--------------GGUGUUUGu-CGAGG- -5'
20672 5' -52.8 NC_004688.1 + 6379 0.66 0.950357
Target:  5'- gGCGaCUucAUgUCACCCGCGGACG--UCCg -3'
miRNA:   3'- -CGC-GA--UGgAGUGGGUGUUUGUcgAGG- -5'
20672 5' -52.8 NC_004688.1 + 42298 0.66 0.950357
Target:  5'- aGCGCUugCUCuAgUgGCuccGGCAGCUuCCg -3'
miRNA:   3'- -CGCGAugGAG-UgGgUGu--UUGUCGA-GG- -5'
20672 5' -52.8 NC_004688.1 + 40665 0.66 0.949923
Target:  5'- uGCGCUugauucgaUCACCCAgggcgucgcucacCAAACcuGCUCCa -3'
miRNA:   3'- -CGCGAugg-----AGUGGGU-------------GUUUGu-CGAGG- -5'
20672 5' -52.8 NC_004688.1 + 28244 0.66 0.945446
Target:  5'- -aGCUACCUCuugcCCCGCAgggucuguGACAuagauucGCUCg -3'
miRNA:   3'- cgCGAUGGAGu---GGGUGU--------UUGU-------CGAGg -5'
20672 5' -52.8 NC_004688.1 + 45949 0.66 0.941199
Target:  5'- gGCGUcgaggccggucaUugCUCAgCCAC---CAGCUCCu -3'
miRNA:   3'- -CGCG------------AugGAGUgGGUGuuuGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 2973 0.66 0.941199
Target:  5'- --uCUAUCUCACCCGCGAGCA--UCa -3'
miRNA:   3'- cgcGAUGGAGUGGGUGUUUGUcgAGg -5'
20672 5' -52.8 NC_004688.1 + 28161 0.66 0.941199
Target:  5'- aGCGCacgcGCCcCACCCGgAAGUAGC-CCg -3'
miRNA:   3'- -CGCGa---UGGaGUGGGUgUUUGUCGaGG- -5'
20672 5' -52.8 NC_004688.1 + 55928 0.66 0.941199
Target:  5'- aGUGCcgACCUCagACCCGCu--CGGCcacUCCc -3'
miRNA:   3'- -CGCGa-UGGAG--UGGGUGuuuGUCG---AGG- -5'
20672 5' -52.8 NC_004688.1 + 93128 0.67 0.936236
Target:  5'- gGCGCUuaggagcgGCUUCgacgGCCUGCucGAGCGGCUCg -3'
miRNA:   3'- -CGCGA--------UGGAG----UGGGUG--UUUGUCGAGg -5'
20672 5' -52.8 NC_004688.1 + 29852 0.67 0.931013
Target:  5'- -gGCUugCgCGCgaCCACGAugGGCUCa -3'
miRNA:   3'- cgCGAugGaGUG--GGUGUUugUCGAGg -5'
20672 5' -52.8 NC_004688.1 + 53121 0.67 0.931013
Target:  5'- gGCGCcaccCCUCGCCCA---GguGCUCg -3'
miRNA:   3'- -CGCGau--GGAGUGGGUguuUguCGAGg -5'
20672 5' -52.8 NC_004688.1 + 101626 0.67 0.931013
Target:  5'- gGCGCUuuCCUCGggcucUUCACGAGCcuCUCCg -3'
miRNA:   3'- -CGCGAu-GGAGU-----GGGUGUUUGucGAGG- -5'
20672 5' -52.8 NC_004688.1 + 30395 0.67 0.931013
Target:  5'- gGUGCccACCgggCuugaggACCCGCAGGCAuuGCUCCc -3'
miRNA:   3'- -CGCGa-UGGa--G------UGGGUGUUUGU--CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.