miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20672 5' -52.8 NC_004688.1 + 63874 0.78 0.357533
Target:  5'- aGCGCUcccaccacGCCUCGCCCACGAA-GGCUaaaCCg -3'
miRNA:   3'- -CGCGA--------UGGAGUGGGUGUUUgUCGA---GG- -5'
20672 5' -52.8 NC_004688.1 + 42048 0.78 0.400415
Target:  5'- gGCGCccgGCCUCGuCCCAUuccaauuCGGCUCCa -3'
miRNA:   3'- -CGCGa--UGGAGU-GGGUGuuu----GUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 109637 0.77 0.418463
Target:  5'- aGCGC-GCCUCgucgACCCAUAAG-AGCUCCg -3'
miRNA:   3'- -CGCGaUGGAG----UGGGUGUUUgUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 8734 0.76 0.485294
Target:  5'- cGCGCUACCUC-CCCgAUggGgAGCUUg -3'
miRNA:   3'- -CGCGAUGGAGuGGG-UGuuUgUCGAGg -5'
20672 5' -52.8 NC_004688.1 + 3036 0.75 0.544285
Target:  5'- ---aUACCUCACCCGCAuugcugacagcuACGGUUCCg -3'
miRNA:   3'- cgcgAUGGAGUGGGUGUu-----------UGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 104637 0.74 0.599033
Target:  5'- gGCGCUuACgCUCGCCCguGCGGAguuGCUCCa -3'
miRNA:   3'- -CGCGA-UG-GAGUGGG--UGUUUgu-CGAGG- -5'
20672 5' -52.8 NC_004688.1 + 57303 0.74 0.609677
Target:  5'- uGCGCUGCCU-GCCCGCGGugucgauguACcaGGCUCUc -3'
miRNA:   3'- -CGCGAUGGAgUGGGUGUU---------UG--UCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 42500 0.73 0.65235
Target:  5'- cCGCUACCUgccaaCGCCC-CGacGACGGUUCCc -3'
miRNA:   3'- cGCGAUGGA-----GUGGGuGU--UUGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 84794 0.72 0.673618
Target:  5'- cCGCcaGCCgcacCGCCCGCAGcaccgggggcACGGCUCCg -3'
miRNA:   3'- cGCGa-UGGa---GUGGGUGUU----------UGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 82618 0.72 0.684201
Target:  5'- cGCGgUAguCCUCGCCCACGugcGACuGCgUCCc -3'
miRNA:   3'- -CGCgAU--GGAGUGGGUGU---UUGuCG-AGG- -5'
20672 5' -52.8 NC_004688.1 + 110404 0.7 0.785764
Target:  5'- cGCGCUGCUggucgCGCCUGCGguAGC-GCUCUc -3'
miRNA:   3'- -CGCGAUGGa----GUGGGUGU--UUGuCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 86612 0.7 0.794321
Target:  5'- aGCGCUGCg--GCCCGCGuucggguuccagcGACGGCgUCCg -3'
miRNA:   3'- -CGCGAUGgagUGGGUGU-------------UUGUCG-AGG- -5'
20672 5' -52.8 NC_004688.1 + 24271 0.7 0.795264
Target:  5'- uGCGCaccgcgggUACCggAgCCACGGcCAGCUCCa -3'
miRNA:   3'- -CGCG--------AUGGagUgGGUGUUuGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 33610 0.7 0.804604
Target:  5'- cGCGCgaggcGCUUCugCUcCAGAC-GCUCCg -3'
miRNA:   3'- -CGCGa----UGGAGugGGuGUUUGuCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 93702 0.7 0.813774
Target:  5'- gGCGCUGCUuuacgUCACCCG-GGACGGCg-- -3'
miRNA:   3'- -CGCGAUGG-----AGUGGGUgUUUGUCGagg -5'
20672 5' -52.8 NC_004688.1 + 56857 0.7 0.822765
Target:  5'- aGCGCUGCCggguguuuuUCCGuuugguGGCAGCUCCa -3'
miRNA:   3'- -CGCGAUGGagu------GGGUgu----UUGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 53978 0.69 0.848572
Target:  5'- cGCGgUcCCuaUCACCCACGGACuaAGC-CCg -3'
miRNA:   3'- -CGCgAuGG--AGUGGGUGUUUG--UCGaGG- -5'
20672 5' -52.8 NC_004688.1 + 72547 0.69 0.864723
Target:  5'- cGCGCUGCCggauuucugCACCgACGAAUccGCUUUa -3'
miRNA:   3'- -CGCGAUGGa--------GUGGgUGUUUGu-CGAGG- -5'
20672 5' -52.8 NC_004688.1 + 79766 0.69 0.864723
Target:  5'- cGCGCUGCgCggugggCACCCACAuGCcG-UCCg -3'
miRNA:   3'- -CGCGAUG-Ga-----GUGGGUGUuUGuCgAGG- -5'
20672 5' -52.8 NC_004688.1 + 20055 0.68 0.870931
Target:  5'- cGCGCUGCUgccaccgggagACCCGCGGAUAGC-Cg -3'
miRNA:   3'- -CGCGAUGGag---------UGGGUGUUUGUCGaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.