miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20672 5' -52.8 NC_004688.1 + 16035 0.67 0.925531
Target:  5'- cCGCgUACCUCuuACCCGCGuAUcGCUCg -3'
miRNA:   3'- cGCG-AUGGAG--UGGGUGUuUGuCGAGg -5'
20672 5' -52.8 NC_004688.1 + 42882 0.67 0.925531
Target:  5'- -aGCcGCCaauGCCCGCAAACAGgUCa -3'
miRNA:   3'- cgCGaUGGag-UGGGUGUUUGUCgAGg -5'
20672 5' -52.8 NC_004688.1 + 39348 0.67 0.913787
Target:  5'- gGCGCuUGCaCUCAUCCACGu-CGGCg-- -3'
miRNA:   3'- -CGCG-AUG-GAGUGGGUGUuuGUCGagg -5'
20672 5' -52.8 NC_004688.1 + 12333 0.67 0.907527
Target:  5'- cGCGCcgcaUGCC-CACCauuGCAuGCGGCgUCCg -3'
miRNA:   3'- -CGCG----AUGGaGUGGg--UGUuUGUCG-AGG- -5'
20672 5' -52.8 NC_004688.1 + 70683 0.67 0.907527
Target:  5'- aCGCUGCCgguggCgaauGCCCACGAGagUAGC-CCg -3'
miRNA:   3'- cGCGAUGGa----G----UGGGUGUUU--GUCGaGG- -5'
20672 5' -52.8 NC_004688.1 + 73633 0.68 0.900346
Target:  5'- -gGCUucaUUCGCCCcugugguGCcAGCAGCUCCg -3'
miRNA:   3'- cgCGAug-GAGUGGG-------UGuUUGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 54756 0.68 0.894243
Target:  5'- gGCGCUgGCCgguauuCCCACucgcuuGGCAGCUgCCc -3'
miRNA:   3'- -CGCGA-UGGagu---GGGUGu-----UUGUCGA-GG- -5'
20672 5' -52.8 NC_004688.1 + 105164 0.68 0.894243
Target:  5'- uCGCUGCCUUuCgCgGCAAACggaacggauugAGCUCCu -3'
miRNA:   3'- cGCGAUGGAGuG-GgUGUUUG-----------UCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 55818 0.68 0.892164
Target:  5'- uUGCaACCUCugGCCCGCAAguggucgggugagaGCAGUguUCCg -3'
miRNA:   3'- cGCGaUGGAG--UGGGUGUU--------------UGUCG--AGG- -5'
20672 5' -52.8 NC_004688.1 + 39976 0.68 0.892164
Target:  5'- cGgGCUgaagguucauugagACUUCACCCAUucaauaAGCUCCu -3'
miRNA:   3'- -CgCGA--------------UGGAGUGGGUGuuug--UCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 20055 0.68 0.870931
Target:  5'- cGCGCUGCUgccaccgggagACCCGCGGAUAGC-Cg -3'
miRNA:   3'- -CGCGAUGGag---------UGGGUGUUUGUCGaGg -5'
20672 5' -52.8 NC_004688.1 + 79766 0.69 0.864723
Target:  5'- cGCGCUGCgCggugggCACCCACAuGCcG-UCCg -3'
miRNA:   3'- -CGCGAUG-Ga-----GUGGGUGUuUGuCgAGG- -5'
20672 5' -52.8 NC_004688.1 + 72547 0.69 0.864723
Target:  5'- cGCGCUGCCggauuucugCACCgACGAAUccGCUUUa -3'
miRNA:   3'- -CGCGAUGGa--------GUGGgUGUUUGu-CGAGG- -5'
20672 5' -52.8 NC_004688.1 + 53978 0.69 0.848572
Target:  5'- cGCGgUcCCuaUCACCCACGGACuaAGC-CCg -3'
miRNA:   3'- -CGCgAuGG--AGUGGGUGUUUG--UCGaGG- -5'
20672 5' -52.8 NC_004688.1 + 56857 0.7 0.822765
Target:  5'- aGCGCUGCCggguguuuuUCCGuuugguGGCAGCUCCa -3'
miRNA:   3'- -CGCGAUGGagu------GGGUgu----UUGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 93702 0.7 0.813774
Target:  5'- gGCGCUGCUuuacgUCACCCG-GGACGGCg-- -3'
miRNA:   3'- -CGCGAUGG-----AGUGGGUgUUUGUCGagg -5'
20672 5' -52.8 NC_004688.1 + 33610 0.7 0.804604
Target:  5'- cGCGCgaggcGCUUCugCUcCAGAC-GCUCCg -3'
miRNA:   3'- -CGCGa----UGGAGugGGuGUUUGuCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 24271 0.7 0.795264
Target:  5'- uGCGCaccgcgggUACCggAgCCACGGcCAGCUCCa -3'
miRNA:   3'- -CGCG--------AUGGagUgGGUGUUuGUCGAGG- -5'
20672 5' -52.8 NC_004688.1 + 86612 0.7 0.794321
Target:  5'- aGCGCUGCg--GCCCGCGuucggguuccagcGACGGCgUCCg -3'
miRNA:   3'- -CGCGAUGgagUGGGUGU-------------UUGUCG-AGG- -5'
20672 5' -52.8 NC_004688.1 + 110404 0.7 0.785764
Target:  5'- cGCGCUGCUggucgCGCCUGCGguAGC-GCUCUc -3'
miRNA:   3'- -CGCGAUGGa----GUGGGUGU--UUGuCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.