Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20674 | 3' | -57.8 | NC_004688.1 | + | 29710 | 0.66 | 0.738051 |
Target: 5'- cGCgUCGaGCUCGGCAGCcugcguGCCAucGAg -3' miRNA: 3'- uUGgAGUaCGAGCCGUCG------CGGUucCU- -5' |
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20674 | 3' | -57.8 | NC_004688.1 | + | 93104 | 0.66 | 0.707504 |
Target: 5'- cACCUUucggggGCcgcccgCGGCGGCGCUuAGGAg -3' miRNA: 3'- uUGGAGua----CGa-----GCCGUCGCGGuUCCU- -5' |
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20674 | 3' | -57.8 | NC_004688.1 | + | 106652 | 0.67 | 0.665872 |
Target: 5'- aGACCUCA-GCgccgCGG--GCGCCGAGGc -3' miRNA: 3'- -UUGGAGUaCGa---GCCguCGCGGUUCCu -5' |
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20674 | 3' | -57.8 | NC_004688.1 | + | 19897 | 0.67 | 0.644845 |
Target: 5'- gGACCUCGUGgUCGcgcuccacuGCGGCGUaCAGGGc -3' miRNA: 3'- -UUGGAGUACgAGC---------CGUCGCG-GUUCCu -5' |
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20674 | 3' | -57.8 | NC_004688.1 | + | 17649 | 0.67 | 0.623774 |
Target: 5'- cGACCUCGgcgaaggGCUCGGCGGgcuUGCCAcgauggcGGAc -3' miRNA: 3'- -UUGGAGUa------CGAGCCGUC---GCGGUu------CCU- -5' |
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20674 | 3' | -57.8 | NC_004688.1 | + | 107740 | 0.69 | 0.56098 |
Target: 5'- -uCCUCGaGCggCGGCAGCggGCCAcGGAg -3' miRNA: 3'- uuGGAGUaCGa-GCCGUCG--CGGUuCCU- -5' |
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20674 | 3' | -57.8 | NC_004688.1 | + | 75905 | 0.7 | 0.461079 |
Target: 5'- gAugUUCGUcgccaGCgcccCGGCAGCGUCGAGGAa -3' miRNA: 3'- -UugGAGUA-----CGa---GCCGUCGCGGUUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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