miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20678 3' -60.8 NC_004688.1 + 94268 0.66 0.667053
Target:  5'- aUuuGCCGGggCCAaauccgaCGCGAcacccaucuucgggcCGCCCCGg -3'
miRNA:   3'- -AggUGGUCuaGGUg------GCGCU---------------GCGGGGC- -5'
20678 3' -60.8 NC_004688.1 + 12529 0.66 0.653046
Target:  5'- cCCGCCAG-----UCGuCGACGCCCCa -3'
miRNA:   3'- aGGUGGUCuagguGGC-GCUGCGGGGc -5'
20678 3' -60.8 NC_004688.1 + 45165 0.66 0.653046
Target:  5'- -aCGCCGGggUCGCC-CGGCGCCUa- -3'
miRNA:   3'- agGUGGUCuaGGUGGcGCUGCGGGgc -5'
20678 3' -60.8 NC_004688.1 + 77481 0.66 0.652044
Target:  5'- gCCGCCGGAaccuguaUCCACgGCGAUacucaCCCaCGg -3'
miRNA:   3'- aGGUGGUCU-------AGGUGgCGCUGc----GGG-GC- -5'
20678 3' -60.8 NC_004688.1 + 86285 0.66 0.643021
Target:  5'- gUCGCgaAGGUCgAgCGCGGCGCgCCGa -3'
miRNA:   3'- aGGUGg-UCUAGgUgGCGCUGCGgGGC- -5'
20678 3' -60.8 NC_004688.1 + 82458 0.66 0.632988
Target:  5'- aCCACCAGGUCCgggaaGCCG-GGCugGUCgCCGa -3'
miRNA:   3'- aGGUGGUCUAGG-----UGGCgCUG--CGG-GGC- -5'
20678 3' -60.8 NC_004688.1 + 67327 0.66 0.632988
Target:  5'- -gCGCCgAGGgggUCGCCGCGACGggcuUCCCGu -3'
miRNA:   3'- agGUGG-UCUa--GGUGGCGCUGC----GGGGC- -5'
20678 3' -60.8 NC_004688.1 + 75360 0.66 0.622954
Target:  5'- aCCGCCGGcgCCGCCauaUGugGCCgaCGg -3'
miRNA:   3'- aGGUGGUCuaGGUGGc--GCugCGGg-GC- -5'
20678 3' -60.8 NC_004688.1 + 65157 0.66 0.612927
Target:  5'- aCCGCaCAGA-CC-CCGCGcACGCCUa- -3'
miRNA:   3'- aGGUG-GUCUaGGuGGCGC-UGCGGGgc -5'
20678 3' -60.8 NC_004688.1 + 57685 0.67 0.602914
Target:  5'- aUCgGCCGGcgagugaugGUCCAgCGCGAagaaGCCCgCGa -3'
miRNA:   3'- -AGgUGGUC---------UAGGUgGCGCUg---CGGG-GC- -5'
20678 3' -60.8 NC_004688.1 + 96121 0.67 0.602914
Target:  5'- gUCGCCAuAUCCcCCGCGACacccaagaagGCUCCGc -3'
miRNA:   3'- aGGUGGUcUAGGuGGCGCUG----------CGGGGC- -5'
20678 3' -60.8 NC_004688.1 + 78421 0.67 0.582957
Target:  5'- cCCACCAGAacgugcCCGCaGCGGCGUCuUCGg -3'
miRNA:   3'- aGGUGGUCUa-----GGUGgCGCUGCGG-GGC- -5'
20678 3' -60.8 NC_004688.1 + 50886 0.67 0.582957
Target:  5'- cUCgGCCcgaGGGUgCCACCGCGccggcgaccaaGCGCCCgGu -3'
miRNA:   3'- -AGgUGG---UCUA-GGUGGCGC-----------UGCGGGgC- -5'
20678 3' -60.8 NC_004688.1 + 57212 0.67 0.582957
Target:  5'- gCCugCGGGUCCGCCcagGCuccggcauuGACGUCgCCGg -3'
miRNA:   3'- aGGugGUCUAGGUGG---CG---------CUGCGG-GGC- -5'
20678 3' -60.8 NC_004688.1 + 97341 0.67 0.582957
Target:  5'- aCCuCCGGAUaggCCugCGCGACgucguugacgGCCUCGg -3'
miRNA:   3'- aGGuGGUCUA---GGugGCGCUG----------CGGGGC- -5'
20678 3' -60.8 NC_004688.1 + 75415 0.67 0.582957
Target:  5'- aCCACCGcGAa-CACCGUGGC-CCCCu -3'
miRNA:   3'- aGGUGGU-CUagGUGGCGCUGcGGGGc -5'
20678 3' -60.8 NC_004688.1 + 15491 0.67 0.573026
Target:  5'- cCUACCGGcAUCUuCCGCGGuccCGuCCCCGc -3'
miRNA:   3'- aGGUGGUC-UAGGuGGCGCU---GC-GGGGC- -5'
20678 3' -60.8 NC_004688.1 + 85125 0.67 0.573026
Target:  5'- cCCGCCGGggCCGCCuugGGgGCCgCCGg -3'
miRNA:   3'- aGGUGGUCuaGGUGGcg-CUgCGG-GGC- -5'
20678 3' -60.8 NC_004688.1 + 57420 0.67 0.573026
Target:  5'- aCCACauguCGGcgaCGCCGUGcCGCCCCGg -3'
miRNA:   3'- aGGUG----GUCuagGUGGCGCuGCGGGGC- -5'
20678 3' -60.8 NC_004688.1 + 45339 0.67 0.572035
Target:  5'- aUCCAgccguucUCGGAguaggucaaUCCGCCG-GGCGCCUCGa -3'
miRNA:   3'- -AGGU-------GGUCU---------AGGUGGCgCUGCGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.