miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20678 5' -54.6 NC_004688.1 + 20638 0.66 0.9171
Target:  5'- uUUgAGGcGCGGCggGCGGUCgucGGUccaguUGCCg -3'
miRNA:   3'- -AGgUCC-CGCUGa-CGCUAGa--CCA-----AUGG- -5'
20678 5' -54.6 NC_004688.1 + 107094 0.66 0.9171
Target:  5'- gCCAGGGUuuCUGCGAcccuuccgUUGGccGCCa -3'
miRNA:   3'- aGGUCCCGcuGACGCUa-------GACCaaUGG- -5'
20678 5' -54.6 NC_004688.1 + 67927 0.66 0.904809
Target:  5'- cCCGGGGUGGC-GCcGggUGGggACCg -3'
miRNA:   3'- aGGUCCCGCUGaCGcUagACCaaUGG- -5'
20678 5' -54.6 NC_004688.1 + 49012 0.66 0.90288
Target:  5'- uUCCAGcuugcaauccgaccGGUGGCUGCGG-CgguaGUUGCCg -3'
miRNA:   3'- -AGGUC--------------CCGCUGACGCUaGac--CAAUGG- -5'
20678 5' -54.6 NC_004688.1 + 41168 0.67 0.877294
Target:  5'- aCCAGGGUGGCaGCGGcCUGcu--CCg -3'
miRNA:   3'- aGGUCCCGCUGaCGCUaGACcaauGG- -5'
20678 5' -54.6 NC_004688.1 + 104704 0.67 0.869827
Target:  5'- -gUAGGGCuGugUGCG--CUGGUcgGCCg -3'
miRNA:   3'- agGUCCCG-CugACGCuaGACCAa-UGG- -5'
20678 5' -54.6 NC_004688.1 + 61117 0.67 0.84528
Target:  5'- aCCAGGGuCGAUgGCGcaagaaggaccccGUCUGGcggcgGCCg -3'
miRNA:   3'- aGGUCCC-GCUGaCGC-------------UAGACCaa---UGG- -5'
20678 5' -54.6 NC_004688.1 + 35504 0.7 0.704577
Target:  5'- -aCAGGGCGGCgccgGCGAgaaggauGUUGCCg -3'
miRNA:   3'- agGUCCCGCUGa---CGCUagac---CAAUGG- -5'
20678 5' -54.6 NC_004688.1 + 28338 0.73 0.537954
Target:  5'- aUCCAGcGGCGGCUGCcGAUgCgGGggAUCa -3'
miRNA:   3'- -AGGUC-CCGCUGACG-CUA-GaCCaaUGG- -5'
20678 5' -54.6 NC_004688.1 + 71113 0.75 0.431033
Target:  5'- gUgAGGGCGGCUGUGA--UGGUUGCg -3'
miRNA:   3'- aGgUCCCGCUGACGCUagACCAAUGg -5'
20678 5' -54.6 NC_004688.1 + 99942 0.76 0.412937
Target:  5'- cUCCAGGGCG-CUGCcgGcgCUGGUggcagugACCu -3'
miRNA:   3'- -AGGUCCCGCuGACG--CuaGACCAa------UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.