miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2068 5' -57 NC_001348.1 + 104028 0.66 0.787478
Target:  5'- gAUGGacuCCcGACUCGGUccugggcuuGGUgGCAGAAGa -3'
miRNA:   3'- -UACC---GGuCUGAGCCG---------CCAgUGUCUUC- -5'
2068 5' -57 NC_001348.1 + 97895 0.67 0.749173
Target:  5'- -aGGCCguuacuuuGGACUCGGgggcuuUGGUaaaGCAGAAGg -3'
miRNA:   3'- uaCCGG--------UCUGAGCC------GCCAg--UGUCUUC- -5'
2068 5' -57 NC_001348.1 + 95281 0.67 0.739307
Target:  5'- uUGGCCAGAggagCGGCGGuugUCACAa--- -3'
miRNA:   3'- uACCGGUCUga--GCCGCC---AGUGUcuuc -5'
2068 5' -57 NC_001348.1 + 102622 0.69 0.636911
Target:  5'- aAUGGCCGGAaggUGGCGGgggUGguGAAGg -3'
miRNA:   3'- -UACCGGUCUga-GCCGCCa--GUguCUUC- -5'
2068 5' -57 NC_001348.1 + 123588 1.07 0.002062
Target:  5'- gAUGGCCAGACUCGGCGGUCACAGAAGg -3'
miRNA:   3'- -UACCGGUCUGAGCCGCCAGUGUCUUC- -5'
2068 5' -57 NC_001348.1 + 106204 1.07 0.002062
Target:  5'- gAUGGCCAGACUCGGCGGUCACAGAAGg -3'
miRNA:   3'- -UACCGGUCUGAGCCGCCAGUGUCUUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.