miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20680 3' -61.3 NC_004688.1 + 68878 0.66 0.610341
Target:  5'- uCGCCGGUC-CGGacguAGUgGuAGCCGGCg -3'
miRNA:   3'- -GUGGUCAGcGCCcc--UCAgC-UCGGCCG- -5'
20680 3' -61.3 NC_004688.1 + 103850 0.66 0.610341
Target:  5'- gGCCAGUCGUGGauagcGGGcgUGGGCUuGGCg -3'
miRNA:   3'- gUGGUCAGCGCCc----CUCa-GCUCGG-CCG- -5'
20680 3' -61.3 NC_004688.1 + 63828 0.67 0.560723
Target:  5'- aGCCc-UCGCGGGauucaUCGAGUCGGCu -3'
miRNA:   3'- gUGGucAGCGCCCcuc--AGCUCGGCCG- -5'
20680 3' -61.3 NC_004688.1 + 82459 0.67 0.531471
Target:  5'- cCACCAgGUC-CGGGaAGcCGGGCUGGUc -3'
miRNA:   3'- -GUGGU-CAGcGCCCcUCaGCUCGGCCG- -5'
20680 3' -61.3 NC_004688.1 + 104236 0.68 0.52184
Target:  5'- gACCA--CGCGGuccacGGGGUcCGuGCCGGCg -3'
miRNA:   3'- gUGGUcaGCGCC-----CCUCA-GCuCGGCCG- -5'
20680 3' -61.3 NC_004688.1 + 27866 0.68 0.52184
Target:  5'- aCACCAGUUugGCGGGGAGUgCGGacaucGCCc-- -3'
miRNA:   3'- -GUGGUCAG--CGCCCCUCA-GCU-----CGGccg -5'
20680 3' -61.3 NC_004688.1 + 8944 0.68 0.512278
Target:  5'- aCGCCGG-CGCaacGGGGAGUUGuucgaGGUCGcGCg -3'
miRNA:   3'- -GUGGUCaGCG---CCCCUCAGC-----UCGGC-CG- -5'
20680 3' -61.3 NC_004688.1 + 45449 0.7 0.391022
Target:  5'- aGCCccGUagaGCGGGGcuucgcagguggcccAGUCGAuGCCGGCu -3'
miRNA:   3'- gUGGu-CAg--CGCCCC---------------UCAGCU-CGGCCG- -5'
20680 3' -61.3 NC_004688.1 + 110168 0.7 0.387744
Target:  5'- gCACCAGUCGCaGGGGcugccGUCcacauGAGCCgcccggagGGCg -3'
miRNA:   3'- -GUGGUCAGCG-CCCCu----CAG-----CUCGG--------CCG- -5'
20680 3' -61.3 NC_004688.1 + 12058 0.77 0.144874
Target:  5'- uGCCuAGUCaGCGGGGGG-CGGGCCaGCg -3'
miRNA:   3'- gUGG-UCAG-CGCCCCUCaGCUCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.