Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20683 | 3' | -54.5 | NC_004688.1 | + | 92666 | 0.66 | 0.886224 |
Target: 5'- ----cGUGGCGCCGGugcCGACCaUCa- -3' miRNA: 3'- uauuaCGUCGCGGCCua-GCUGG-AGau -5' |
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20683 | 3' | -54.5 | NC_004688.1 | + | 81880 | 0.66 | 0.854497 |
Target: 5'- gAUAAUGCgGGUGUCGGAgaccgcagcuuucUCGAUCUCc- -3' miRNA: 3'- -UAUUACG-UCGCGGCCU-------------AGCUGGAGau -5' |
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20683 | 3' | -54.5 | NC_004688.1 | + | 44618 | 0.67 | 0.829767 |
Target: 5'- -aAGUGUgAGCGaCCGGGUCGAaaaugaCCUCa- -3' miRNA: 3'- uaUUACG-UCGC-GGCCUAGCU------GGAGau -5' |
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20683 | 3' | -54.5 | NC_004688.1 | + | 79992 | 0.68 | 0.783327 |
Target: 5'- ----gGCAGCGgaucguCCGGGUCGACCg--- -3' miRNA: 3'- uauuaCGUCGC------GGCCUAGCUGGagau -5' |
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20683 | 3' | -54.5 | NC_004688.1 | + | 37274 | 0.73 | 0.500173 |
Target: 5'- -cGAUGCGGgGCCGGGcccgcgggucaUCGAUCUCg- -3' miRNA: 3'- uaUUACGUCgCGGCCU-----------AGCUGGAGau -5' |
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20683 | 3' | -54.5 | NC_004688.1 | + | 101899 | 0.74 | 0.450647 |
Target: 5'- ----cGCAGCGCCuGAUCGuCCUCg- -3' miRNA: 3'- uauuaCGUCGCGGcCUAGCuGGAGau -5' |
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20683 | 3' | -54.5 | NC_004688.1 | + | 60817 | 0.84 | 0.106677 |
Target: 5'- -cGAUGUGGCGCCGGAUCGACCa--- -3' miRNA: 3'- uaUUACGUCGCGGCCUAGCUGGagau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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