miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20683 3' -54.5 NC_004688.1 + 92666 0.66 0.886224
Target:  5'- ----cGUGGCGCCGGugcCGACCaUCa- -3'
miRNA:   3'- uauuaCGUCGCGGCCua-GCUGG-AGau -5'
20683 3' -54.5 NC_004688.1 + 81880 0.66 0.854497
Target:  5'- gAUAAUGCgGGUGUCGGAgaccgcagcuuucUCGAUCUCc- -3'
miRNA:   3'- -UAUUACG-UCGCGGCCU-------------AGCUGGAGau -5'
20683 3' -54.5 NC_004688.1 + 44618 0.67 0.829767
Target:  5'- -aAGUGUgAGCGaCCGGGUCGAaaaugaCCUCa- -3'
miRNA:   3'- uaUUACG-UCGC-GGCCUAGCU------GGAGau -5'
20683 3' -54.5 NC_004688.1 + 79992 0.68 0.783327
Target:  5'- ----gGCAGCGgaucguCCGGGUCGACCg--- -3'
miRNA:   3'- uauuaCGUCGC------GGCCUAGCUGGagau -5'
20683 3' -54.5 NC_004688.1 + 37274 0.73 0.500173
Target:  5'- -cGAUGCGGgGCCGGGcccgcgggucaUCGAUCUCg- -3'
miRNA:   3'- uaUUACGUCgCGGCCU-----------AGCUGGAGau -5'
20683 3' -54.5 NC_004688.1 + 101899 0.74 0.450647
Target:  5'- ----cGCAGCGCCuGAUCGuCCUCg- -3'
miRNA:   3'- uauuaCGUCGCGGcCUAGCuGGAGau -5'
20683 3' -54.5 NC_004688.1 + 60817 0.84 0.106677
Target:  5'- -cGAUGUGGCGCCGGAUCGACCa--- -3'
miRNA:   3'- uaUUACGUCGCGGCCUAGCUGGagau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.