miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20683 5' -48.9 NC_004688.1 + 105718 0.66 0.996816
Target:  5'- cGGuaGAUGuUCGaAUCGGcccggcccGCAUUGCGGCg -3'
miRNA:   3'- -CUggCUAU-AGC-UAGUU--------CGUAACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 72633 0.66 0.996229
Target:  5'- cGCCGGUAUUGAUCuucGCGU--UGGUg -3'
miRNA:   3'- cUGGCUAUAGCUAGuu-CGUAacGCCG- -5'
20683 5' -48.9 NC_004688.1 + 65758 0.66 0.995767
Target:  5'- -uCCGAUgguuugcuugagcucGUCGGUgGuggcggccugcuuAGCGUUGUGGCg -3'
miRNA:   3'- cuGGCUA---------------UAGCUAgU-------------UCGUAACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 100205 0.66 0.995556
Target:  5'- cGCUGGgggCGGUCAgcgcGGCGUUguccGCGGCc -3'
miRNA:   3'- cUGGCUauaGCUAGU----UCGUAA----CGCCG- -5'
20683 5' -48.9 NC_004688.1 + 70149 0.66 0.995556
Target:  5'- aACCGGUGgagaCGAUCAcGGCAUguacagcGCuGGCg -3'
miRNA:   3'- cUGGCUAUa---GCUAGU-UCGUAa------CG-CCG- -5'
20683 5' -48.9 NC_004688.1 + 99501 0.66 0.994788
Target:  5'- cGACCGAcugCGGgaagCGGGCg--GCGGUg -3'
miRNA:   3'- -CUGGCUauaGCUa---GUUCGuaaCGCCG- -5'
20683 5' -48.9 NC_004688.1 + 91394 0.66 0.994788
Target:  5'- -gUCGAgguUGUCGAUCGGGCGcucuucacgcUUGUGGg -3'
miRNA:   3'- cuGGCU---AUAGCUAGUUCGU----------AACGCCg -5'
20683 5' -48.9 NC_004688.1 + 47158 0.67 0.991819
Target:  5'- cGCCaGGUAuUCGA--GGGCGUUGCGGa -3'
miRNA:   3'- cUGG-CUAU-AGCUagUUCGUAACGCCg -5'
20683 5' -48.9 NC_004688.1 + 13565 0.67 0.988591
Target:  5'- cACCGAacgacUCGuAUCAAGCGguuuggcgucgucUGCGGCg -3'
miRNA:   3'- cUGGCUau---AGC-UAGUUCGUa------------ACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 6037 0.67 0.987648
Target:  5'- --aCGGUAUCcacgcaugGAUCGAGCAg-GUGGCa -3'
miRNA:   3'- cugGCUAUAG--------CUAGUUCGUaaCGCCG- -5'
20683 5' -48.9 NC_004688.1 + 86595 0.68 0.985942
Target:  5'- gGGCCGAUGcccgUGGU--AGCGcUGCGGCc -3'
miRNA:   3'- -CUGGCUAUa---GCUAguUCGUaACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 9051 0.69 0.971692
Target:  5'- cACCGAgGUCGAcguaaUUAAGUAUUgacaccuaGCGGCa -3'
miRNA:   3'- cUGGCUaUAGCU-----AGUUCGUAA--------CGCCG- -5'
20683 5' -48.9 NC_004688.1 + 93213 0.69 0.968883
Target:  5'- gGGCCGAaccucguggcccauUCGggCGAGCucgGCGGCa -3'
miRNA:   3'- -CUGGCUau------------AGCuaGUUCGuaaCGCCG- -5'
20683 5' -48.9 NC_004688.1 + 94662 0.69 0.968559
Target:  5'- --aCGAUGUgcGUCGAGCug-GCGGCg -3'
miRNA:   3'- cugGCUAUAgcUAGUUCGuaaCGCCG- -5'
20683 5' -48.9 NC_004688.1 + 48244 0.69 0.968559
Target:  5'- cACCGAgGUgGGUCuacGCGccUUGCGGCu -3'
miRNA:   3'- cUGGCUaUAgCUAGuu-CGU--AACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 68799 0.7 0.957702
Target:  5'- aGCCGuccUCGAaaUCGAGCAUgGCGGg -3'
miRNA:   3'- cUGGCuauAGCU--AGUUCGUAaCGCCg -5'
20683 5' -48.9 NC_004688.1 + 90900 0.7 0.949183
Target:  5'- cGACCGcucaaccuUGUCGc-CAAGCuUUGCGGCc -3'
miRNA:   3'- -CUGGCu-------AUAGCuaGUUCGuAACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 93398 0.71 0.928913
Target:  5'- gGGCUGuauUCGuucuUCAGGCGcUUGCGGCc -3'
miRNA:   3'- -CUGGCuauAGCu---AGUUCGU-AACGCCG- -5'
20683 5' -48.9 NC_004688.1 + 27474 0.71 0.928913
Target:  5'- --aCGcgAUCGggCAGGCGgagGCGGCu -3'
miRNA:   3'- cugGCuaUAGCuaGUUCGUaa-CGCCG- -5'
20683 5' -48.9 NC_004688.1 + 47878 0.71 0.92316
Target:  5'- uGCCGAUGUgGAagUCcucGGCGcgGCGGCg -3'
miRNA:   3'- cUGGCUAUAgCU--AGu--UCGUaaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.