Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20685 | 3' | -57 | NC_004688.1 | + | 28249 | 0.67 | 0.72388 |
Target: 5'- cCUC-UUGCCCCGCaGGGUCuGUGAc--- -3' miRNA: 3'- -GAGuAACGGGGCG-CCCGG-UACUcaug -5' |
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20685 | 3' | -57 | NC_004688.1 | + | 67138 | 0.67 | 0.713728 |
Target: 5'- ----cUGCguagCCCGCGGGCCAgGGGcGCa -3' miRNA: 3'- gaguaACG----GGGCGCCCGGUaCUCaUG- -5' |
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20685 | 3' | -57 | NC_004688.1 | + | 54788 | 0.69 | 0.609767 |
Target: 5'- ----cUGCCCCuCGGGCC-UGAGcGCg -3' miRNA: 3'- gaguaACGGGGcGCCCGGuACUCaUG- -5' |
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20685 | 3' | -57 | NC_004688.1 | + | 46497 | 0.7 | 0.568187 |
Target: 5'- aCUCA-UGgCCCGCGGGgCAaUGAGUcACc -3' miRNA: 3'- -GAGUaACgGGGCGCCCgGU-ACUCA-UG- -5' |
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20685 | 3' | -57 | NC_004688.1 | + | 85115 | 0.74 | 0.337844 |
Target: 5'- cCUCGUUcGCCCCGCcgGGGCCGccuUGGGgGCc -3' miRNA: 3'- -GAGUAA-CGGGGCG--CCCGGU---ACUCaUG- -5' |
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20685 | 3' | -57 | NC_004688.1 | + | 30798 | 0.75 | 0.315124 |
Target: 5'- uUCggUGCgCCGCGuGGCCAcgUGGGUGCc -3' miRNA: 3'- gAGuaACGgGGCGC-CCGGU--ACUCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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