miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20685 5' -52.9 NC_004688.1 + 4376 0.66 0.928874
Target:  5'- cAAC-CCGUACGGUGCGGcccUCGuGGUGc -3'
miRNA:   3'- uUUGuGGCGUGCCGCGUUu--AGC-CUAC- -5'
20685 5' -52.9 NC_004688.1 + 84514 0.66 0.928874
Target:  5'- -cGCGCC-CAUGGCGCcc--UGGAUGg -3'
miRNA:   3'- uuUGUGGcGUGCCGCGuuuaGCCUAC- -5'
20685 5' -52.9 NC_004688.1 + 31010 0.66 0.928874
Target:  5'- cGACACC-CACgGGCGCccGUCGGccgaGUGg -3'
miRNA:   3'- uUUGUGGcGUG-CCGCGuuUAGCC----UAC- -5'
20685 5' -52.9 NC_004688.1 + 90587 0.67 0.917313
Target:  5'- -uGCACCGUgccaucuagguuGCGGUagucGCGGAUCaGGAUGu -3'
miRNA:   3'- uuUGUGGCG------------UGCCG----CGUUUAG-CCUAC- -5'
20685 5' -52.9 NC_004688.1 + 62714 0.67 0.904693
Target:  5'- ---aGCCGCaAUGGCgagaucGCGGAUUGGAUGc -3'
miRNA:   3'- uuugUGGCG-UGCCG------CGUUUAGCCUAC- -5'
20685 5' -52.9 NC_004688.1 + 70174 0.67 0.889611
Target:  5'- -uACAgCGC-UGGCGCuaucgugggaauGAUCGGAUGg -3'
miRNA:   3'- uuUGUgGCGuGCCGCGu-----------UUAGCCUAC- -5'
20685 5' -52.9 NC_004688.1 + 29575 0.68 0.884555
Target:  5'- -cGCGCCGCccucgucguuguaccCGGCGuCAGGUCGGGc- -3'
miRNA:   3'- uuUGUGGCGu--------------GCCGC-GUUUAGCCUac -5'
20685 5' -52.9 NC_004688.1 + 10998 0.68 0.852556
Target:  5'- aAGAUGCCGCAucugcugguggcUGGCGCGaccgGAUCGGGc- -3'
miRNA:   3'- -UUUGUGGCGU------------GCCGCGU----UUAGCCUac -5'
20685 5' -52.9 NC_004688.1 + 58530 0.69 0.817748
Target:  5'- aAGGCG-CGgGCGGCGCAGAuucaUCGGAg- -3'
miRNA:   3'- -UUUGUgGCgUGCCGCGUUU----AGCCUac -5'
20685 5' -52.9 NC_004688.1 + 15426 0.71 0.719047
Target:  5'- -uACAuCCGCaaauGCGGgGCAAAuUCGGGUGg -3'
miRNA:   3'- uuUGU-GGCG----UGCCgCGUUU-AGCCUAC- -5'
20685 5' -52.9 NC_004688.1 + 78916 0.71 0.697969
Target:  5'- cAAAUugCGCAgCGGCGCAA---GGAUGa -3'
miRNA:   3'- -UUUGugGCGU-GCCGCGUUuagCCUAC- -5'
20685 5' -52.9 NC_004688.1 + 50647 0.73 0.622802
Target:  5'- gAAGCcCCGCccGCGGUGCAGGUUGGGc- -3'
miRNA:   3'- -UUUGuGGCG--UGCCGCGUUUAGCCUac -5'
20685 5' -52.9 NC_004688.1 + 46470 0.73 0.622802
Target:  5'- -uGCGCCGUGCGGUGUuu-UCGGAa- -3'
miRNA:   3'- uuUGUGGCGUGCCGCGuuuAGCCUac -5'
20685 5' -52.9 NC_004688.1 + 81527 0.75 0.466298
Target:  5'- -cACcCCGCGCGGCGgGAAUUGGAc- -3'
miRNA:   3'- uuUGuGGCGUGCCGCgUUUAGCCUac -5'
20685 5' -52.9 NC_004688.1 + 5995 0.8 0.253879
Target:  5'- uGGCACCGCGCGGCGaugAGAUCuuGGAUGa -3'
miRNA:   3'- uUUGUGGCGUGCCGCg--UUUAG--CCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.