miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20688 5' -63 NC_004688.1 + 77199 0.66 0.570106
Target:  5'- cGUGGugUUa---CCGCCGGCCGCg- -3'
miRNA:   3'- cCACCugGAgucgGGCGGCUGGCGgc -5'
20688 5' -63 NC_004688.1 + 103211 0.66 0.570106
Target:  5'- gGGUGGA--UCGGCaugauCGCCGuCgGCCGg -3'
miRNA:   3'- -CCACCUggAGUCGg----GCGGCuGgCGGC- -5'
20688 5' -63 NC_004688.1 + 104911 0.66 0.570106
Target:  5'- --aGGAUCUCGauGCUcuccgCGCCGugCGCCu -3'
miRNA:   3'- ccaCCUGGAGU--CGG-----GCGGCugGCGGc -5'
20688 5' -63 NC_004688.1 + 29087 0.66 0.570106
Target:  5'- uGUGGAguuacuccacguCCUCGGCCgCGCCGG--GCCu -3'
miRNA:   3'- cCACCU------------GGAGUCGG-GCGGCUggCGGc -5'
20688 5' -63 NC_004688.1 + 87204 0.66 0.569132
Target:  5'- ---aGACCUCGuagauccGCCCGCCGAUgGUCc -3'
miRNA:   3'- ccacCUGGAGU-------CGGGCGGCUGgCGGc -5'
20688 5' -63 NC_004688.1 + 22975 0.66 0.560393
Target:  5'- --cGGuuUUCGGCCaCGUCGcgcuGCCGCCGa -3'
miRNA:   3'- ccaCCugGAGUCGG-GCGGC----UGGCGGC- -5'
20688 5' -63 NC_004688.1 + 35777 0.66 0.560393
Target:  5'- gGGUGGcgACCUCGcGCuCCGCUu-CCGCgGa -3'
miRNA:   3'- -CCACC--UGGAGU-CG-GGCGGcuGGCGgC- -5'
20688 5' -63 NC_004688.1 + 68561 0.66 0.560393
Target:  5'- --aGGACgUCGGgC-GuCCGGCCGCCGu -3'
miRNA:   3'- ccaCCUGgAGUCgGgC-GGCUGGCGGC- -5'
20688 5' -63 NC_004688.1 + 41541 0.66 0.549763
Target:  5'- aGUGGugcccccGCCUCGGCCgcagCGCUcacacaGGCCGUCGg -3'
miRNA:   3'- cCACC-------UGGAGUCGG----GCGG------CUGGCGGC- -5'
20688 5' -63 NC_004688.1 + 56963 0.66 0.541112
Target:  5'- aGGUGGAUCUggaUGGUCCuagagGCCGagaaGCCGCCc -3'
miRNA:   3'- -CCACCUGGA---GUCGGG-----CGGC----UGGCGGc -5'
20688 5' -63 NC_004688.1 + 26634 0.66 0.541112
Target:  5'- -uUGGACUU-GGCCUG-CGGCUGCCGc -3'
miRNA:   3'- ccACCUGGAgUCGGGCgGCUGGCGGC- -5'
20688 5' -63 NC_004688.1 + 69419 0.66 0.541112
Target:  5'- cGUGGACCaucucgaggaCGGUCUGCCaGACCuCCGa -3'
miRNA:   3'- cCACCUGGa---------GUCGGGCGG-CUGGcGGC- -5'
20688 5' -63 NC_004688.1 + 58007 0.66 0.541112
Target:  5'- gGGUGGAuggagaugaaCCUCggccccguucaGGCCCGgCGACUgGCCc -3'
miRNA:   3'- -CCACCU----------GGAG-----------UCGGGCgGCUGG-CGGc -5'
20688 5' -63 NC_004688.1 + 103020 0.66 0.541112
Target:  5'- ---cGGCCgcCAGCCCcagGCCGAUgGCCGa -3'
miRNA:   3'- ccacCUGGa-GUCGGG---CGGCUGgCGGC- -5'
20688 5' -63 NC_004688.1 + 92758 0.66 0.531554
Target:  5'- gGGUGagcguGACCUCaaugGGCCCGCgGcaccACCaGCCGc -3'
miRNA:   3'- -CCAC-----CUGGAG----UCGGGCGgC----UGG-CGGC- -5'
20688 5' -63 NC_004688.1 + 2222 0.66 0.531554
Target:  5'- --gGGACCgCAGUagaCCGCU-ACCGCCGu -3'
miRNA:   3'- ccaCCUGGaGUCG---GGCGGcUGGCGGC- -5'
20688 5' -63 NC_004688.1 + 71154 0.66 0.531554
Target:  5'- uGGUGGGCCUCcuguugggGGUggGCCGuCCGgCGg -3'
miRNA:   3'- -CCACCUGGAG--------UCGggCGGCuGGCgGC- -5'
20688 5' -63 NC_004688.1 + 100583 0.66 0.525849
Target:  5'- aGGUcaGGGCCUCguugaccucgacgguGGCCuUGCgGACCGUCu -3'
miRNA:   3'- -CCA--CCUGGAG---------------UCGG-GCGgCUGGCGGc -5'
20688 5' -63 NC_004688.1 + 92307 0.66 0.512628
Target:  5'- aGUGGcCC-CGG-CCGCCaucACCGCCGg -3'
miRNA:   3'- cCACCuGGaGUCgGGCGGc--UGGCGGC- -5'
20688 5' -63 NC_004688.1 + 86852 0.66 0.512628
Target:  5'- --aGGaACUUCAGCCagGCCGggauacugacgGCCGCCa -3'
miRNA:   3'- ccaCC-UGGAGUCGGg-CGGC-----------UGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.