miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2069 3' -60.9 NC_001348.1 + 105216 0.66 0.62429
Target:  5'- aGUCCCCuccuuuucUCGuGAGCGCCaCUgGCGcGCGg -3'
miRNA:   3'- -CGGGGG--------AGCuCUCGUGG-GAgCGC-UGU- -5'
2069 3' -60.9 NC_001348.1 + 124576 0.66 0.62429
Target:  5'- aGUCCCCuccuuuucUCGuGAGCGCCaCUgGCGcGCGg -3'
miRNA:   3'- -CGGGGG--------AGCuCUCGUGG-GAgCGC-UGU- -5'
2069 3' -60.9 NC_001348.1 + 51748 0.67 0.594366
Target:  5'- uGCCCCCUCGuGAuuuucaucaaaaGCAaggugggccgcUCCUCggGCGACGg -3'
miRNA:   3'- -CGGGGGAGCuCU------------CGU-----------GGGAG--CGCUGU- -5'
2069 3' -60.9 NC_001348.1 + 111622 0.67 0.584436
Target:  5'- aGCCCCUcCGAGAG-ACCgUgCGCGAg- -3'
miRNA:   3'- -CGGGGGaGCUCUCgUGGgA-GCGCUgu -5'
2069 3' -60.9 NC_001348.1 + 118170 0.67 0.584436
Target:  5'- aGCCCCUcCGAGAG-ACCgUgCGCGAg- -3'
miRNA:   3'- -CGGGGGaGCUCUCgUGGgA-GCGCUgu -5'
2069 3' -60.9 NC_001348.1 + 17 0.67 0.567632
Target:  5'- gGCCCCCUCGAGAgagaaaaaaaaaaGCgACCCcaccuccccgcgcguUUGCGGg- -3'
miRNA:   3'- -CGGGGGAGCUCU-------------CG-UGGG---------------AGCGCUgu -5'
2069 3' -60.9 NC_001348.1 + 105015 0.67 0.567632
Target:  5'- gGCCCCCUCGAGAgagaaaaaaaaaaGCgACCCcaccuccccgcgcguUUGCGGg- -3'
miRNA:   3'- -CGGGGGAGCUCU-------------CG-UGGG---------------AGCGCUgu -5'
2069 3' -60.9 NC_001348.1 + 74258 0.67 0.564679
Target:  5'- cGCCCCCgaugCGGGAGCcGCCa---CGGCAa -3'
miRNA:   3'- -CGGGGGa---GCUCUCG-UGGgagcGCUGU- -5'
2069 3' -60.9 NC_001348.1 + 107074 0.73 0.281196
Target:  5'- aGCCUCCUCGAcaagauuaggGAGaCACCCgUCGCgGACGc -3'
miRNA:   3'- -CGGGGGAGCU----------CUC-GUGGG-AGCG-CUGU- -5'
2069 3' -60.9 NC_001348.1 + 111360 0.76 0.183275
Target:  5'- cCCCCCUCGcccaacgcgguGAGCGCUUUCGCGGCu -3'
miRNA:   3'- cGGGGGAGCu----------CUCGUGGGAGCGCUGu -5'
2069 3' -60.9 NC_001348.1 + 118432 0.76 0.183275
Target:  5'- cCCCCCUCGcccaacgcgguGAGCGCUUUCGCGGCu -3'
miRNA:   3'- cGGGGGAGCu----------CUCGUGGGAGCGCUGu -5'
2069 3' -60.9 NC_001348.1 + 122718 0.78 0.129244
Target:  5'- aGCCUCCUCGAcaagauuaggGAGaCACCCgUCGCGGCGc -3'
miRNA:   3'- -CGGGGGAGCU----------CUC-GUGGG-AGCGCUGU- -5'
2069 3' -60.9 NC_001348.1 + 123215 1.1 0.000792
Target:  5'- gGCCCCCUCGAGAGCACCCUCGCGACAg -3'
miRNA:   3'- -CGGGGGAGCUCUCGUGGGAGCGCUGU- -5'
2069 3' -60.9 NC_001348.1 + 106577 1.1 0.000792
Target:  5'- gGCCCCCUCGAGAGCACCCUCGCGACAg -3'
miRNA:   3'- -CGGGGGAGCUCUCGUGGGAGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.