Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20691 | 3' | -56.1 | NC_004688.1 | + | 109639 | 0.7 | 0.625716 |
Target: 5'- -cGCGCCUCGUCGACCCauaagaGCUccggaGUCg -3' miRNA: 3'- uaUGUGGAGCAGUUGGGga----CGG-----CAGa -5' |
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20691 | 3' | -56.1 | NC_004688.1 | + | 79415 | 0.69 | 0.636245 |
Target: 5'- -aGCugCUCGUgGAUgCCUGCUGUUc -3' miRNA: 3'- uaUGugGAGCAgUUGgGGACGGCAGa -5' |
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20691 | 3' | -56.1 | NC_004688.1 | + | 85110 | 0.68 | 0.719586 |
Target: 5'- -gACgACCUCGUUcGCCCCgccgggGCCGcCUu -3' miRNA: 3'- uaUG-UGGAGCAGuUGGGGa-----CGGCaGA- -5' |
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20691 | 3' | -56.1 | NC_004688.1 | + | 67985 | 0.68 | 0.739823 |
Target: 5'- -gACACCUCGUagaGGCCCUcguaGCCGggggCUg -3' miRNA: 3'- uaUGUGGAGCAg--UUGGGGa---CGGCa---GA- -5' |
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20691 | 3' | -56.1 | NC_004688.1 | + | 40498 | 0.67 | 0.759664 |
Target: 5'- -gACGCCUCGaCGACCUCggugagGCCGa-- -3' miRNA: 3'- uaUGUGGAGCaGUUGGGGa-----CGGCaga -5' |
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20691 | 3' | -56.1 | NC_004688.1 | + | 25179 | 0.67 | 0.792253 |
Target: 5'- -aGCAUCUCaaugcgacccauguaGUCAuggaguucGCCCCUGCCGcCg -3' miRNA: 3'- uaUGUGGAG---------------CAGU--------UGGGGACGGCaGa -5' |
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20691 | 3' | -56.1 | NC_004688.1 | + | 80359 | 0.66 | 0.816003 |
Target: 5'- -gGgGCCUCuUCGG-CCUUGCCGUCg -3' miRNA: 3'- uaUgUGGAGcAGUUgGGGACGGCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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