Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20691 | 5' | -58.9 | NC_004688.1 | + | 54830 | 0.72 | 0.364316 |
Target: 5'- gCGGGGCGuGCGGAAucUCCUGUugccGCGCu -3' miRNA: 3'- -GCUCCGC-CGUCUUcuAGGACG----CGCGc -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 86295 | 0.66 | 0.719005 |
Target: 5'- uCGAGcGCGGCGcGccGAaccuucUCCUGCGCauccGCGa -3' miRNA: 3'- -GCUC-CGCCGU-CuuCU------AGGACGCG----CGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 105148 | 0.66 | 0.719005 |
Target: 5'- aGGGGCGGCAGcaccuUCgCUGCcuuuCGCGg -3' miRNA: 3'- gCUCCGCCGUCuucu-AG-GACGc---GCGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 79575 | 0.66 | 0.699003 |
Target: 5'- gGAGGCggggucguucaGGCGGGcaaucAGGUCCacGCGCGUa -3' miRNA: 3'- gCUCCG-----------CCGUCU-----UCUAGGa-CGCGCGc -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 2264 | 0.67 | 0.678775 |
Target: 5'- gCGAGcaauuCGGCcGAcuGAUCCgGCGCGCGc -3' miRNA: 3'- -GCUCc----GCCGuCUu-CUAGGaCGCGCGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 10154 | 0.67 | 0.648168 |
Target: 5'- gGAGGCGGaguGAAGGUCgaCUGgGCGg- -3' miRNA: 3'- gCUCCGCCgu-CUUCUAG--GACgCGCgc -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 79217 | 0.67 | 0.626661 |
Target: 5'- -aGGGCGGaCAGcucggccGAGGUCUUGgGCGCc -3' miRNA: 3'- gcUCCGCC-GUC-------UUCUAGGACgCGCGc -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 104634 | 0.68 | 0.611306 |
Target: 5'- aGAGGCGcuuacgcucgcccguGCGGAGuuGcUCCaGCGCGCGg -3' miRNA: 3'- gCUCCGC---------------CGUCUU--CuAGGaCGCGCGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 27696 | 0.69 | 0.516807 |
Target: 5'- cCGcGGGCGGUuGggGGUgUUGCGCGgGu -3' miRNA: 3'- -GC-UCCGCCGuCuuCUAgGACGCGCgC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 53513 | 0.7 | 0.450379 |
Target: 5'- aGAGGCugaauuGCAGggGGcUCaUGCGCGCGc -3' miRNA: 3'- gCUCCGc-----CGUCuuCU-AGgACGCGCGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 47898 | 0.71 | 0.44127 |
Target: 5'- gCGcGGCGGCGG-AGAUCaCcGCGUGCu -3' miRNA: 3'- -GCuCCGCCGUCuUCUAG-GaCGCGCGc -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 40352 | 0.71 | 0.397359 |
Target: 5'- gGGGGCGGCcGAAGucGUCCaGCGCcCGg -3' miRNA: 3'- gCUCCGCCGuCUUC--UAGGaCGCGcGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 10242 | 0.71 | 0.397359 |
Target: 5'- gCGGGGCauGGCAGgcGAUUCUGCuacugcugGCGCu -3' miRNA: 3'- -GCUCCG--CCGUCuuCUAGGACG--------CGCGc -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 104336 | 0.72 | 0.380598 |
Target: 5'- uCGGGcguGCGGUAGAGGAUCa-GgGCGCGa -3' miRNA: 3'- -GCUC---CGCCGUCUUCUAGgaCgCGCGC- -5' |
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20691 | 5' | -58.9 | NC_004688.1 | + | 79400 | 0.66 | 0.728899 |
Target: 5'- cCGGGGUGGaccaGGAgcugcucguGGAugccugcugUUCUGCGCGCa -3' miRNA: 3'- -GCUCCGCCg---UCU---------UCU---------AGGACGCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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