miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20693	3'	-56.3	NC_004688.1	+	56845	0.66	0.83931
	Target:  5'- uGUGGGUGAG-GU-AGCGCUGCc--- -3' miRNA:   3'- gCACCUACUCaCGuUCGCGGCGcaga -5'
20693	3'	-56.3	NC_004688.1	+	55034	0.67	0.785975
	Target:  5'- uCGUGGucGUGAucgagGUggGCGCCGCGa-- -3' miRNA:   3'- -GCACC--UACUca---CGuuCGCGGCGCaga -5'
20693	3'	-56.3	NC_004688.1	+	104279	0.67	0.776528
	Target:  5'- aCGUGGAUGcggccgucGGUGC-AGCGCUGgGa-- -3' miRNA:   3'- -GCACCUAC--------UCACGuUCGCGGCgCaga -5'
20693	3'	-56.3	NC_004688.1	+	83473	0.68	0.737487
	Target:  5'- -cUGGAauUGAgaaaccgaaucGUGCGAGCGCCagaaaGCGUCa -3' miRNA:   3'- gcACCU--ACU-----------CACGUUCGCGG-----CGCAGa -5'
20693	3'	-56.3	NC_004688.1	+	71053	0.68	0.717353
	Target:  5'- cCGUGGuUGucgcAGUGUuuGGGUGCgGCGUCUg -3' miRNA:   3'- -GCACCuAC----UCACG--UUCGCGgCGCAGA- -5'
20693	3'	-56.3	NC_004688.1	+	61708	0.7	0.624088
	Target:  5'- gGUGGAgugaUGAgGUGCGccGCGCCGCGg-- -3' miRNA:   3'- gCACCU----ACU-CACGUu-CGCGGCGCaga -5'
20693	3'	-56.3	NC_004688.1	+	20771	0.71	0.52115
	Target:  5'- --cGGGUGAGgugGCGcauCGCCGCGUCa -3' miRNA:   3'- gcaCCUACUCa--CGUuc-GCGGCGCAGa -5'
20693	3'	-56.3	NC_004688.1	+	97435	0.72	0.481722
	Target:  5'- -aUGGAucggUGAGgGCGGGCGCCGCGa-- -3' miRNA:   3'- gcACCU----ACUCaCGUUCGCGGCGCaga -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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