miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20693 5' -53.4 NC_004688.1 + 98487 0.66 0.944925
Target:  5'- aGAAGACGAGGUcguuguuGGCGaucgcCACCCaCUCuGCg -3'
miRNA:   3'- -CUUUUGCUCUAc------CCGU-----GUGGG-GAG-CG- -5'
20693 5' -53.4 NC_004688.1 + 92002 0.66 0.944925
Target:  5'- ---uACG-GGUGuGGCACGCCCgUCu- -3'
miRNA:   3'- cuuuUGCuCUAC-CCGUGUGGGgAGcg -5'
20693 5' -53.4 NC_004688.1 + 33880 0.66 0.944925
Target:  5'- gGAAGGCGuG-UGGGUccucgggugccGCACCCCaucugaagcgcUCGCc -3'
miRNA:   3'- -CUUUUGCuCuACCCG-----------UGUGGGG-----------AGCG- -5'
20693 5' -53.4 NC_004688.1 + 79233 0.66 0.940182
Target:  5'- ----cCGAGGucuUGGGCGCcuCCCC-CGUg -3'
miRNA:   3'- cuuuuGCUCU---ACCCGUGu-GGGGaGCG- -5'
20693 5' -53.4 NC_004688.1 + 60720 0.66 0.935183
Target:  5'- cAAAugGAGGUGGcGagaaugaGCGCCCUguggaUCGCc -3'
miRNA:   3'- cUUUugCUCUACC-Cg------UGUGGGG-----AGCG- -5'
20693 5' -53.4 NC_004688.1 + 18819 0.66 0.935183
Target:  5'- --cGAUGAGAUccgcgccggGGGC-CGCCCCaUGCc -3'
miRNA:   3'- cuuUUGCUCUA---------CCCGuGUGGGGaGCG- -5'
20693 5' -53.4 NC_004688.1 + 12729 0.66 0.926649
Target:  5'- gGAAAGCGAcgcgcccccucuuucGGgcGGGCgucGCACCCCggauUCGCa -3'
miRNA:   3'- -CUUUUGCU---------------CUa-CCCG---UGUGGGG----AGCG- -5'
20693 5' -53.4 NC_004688.1 + 35770 0.67 0.91261
Target:  5'- uGGAACGGGGUGGcgaccuCGCGCUCCgcuucCGCg -3'
miRNA:   3'- cUUUUGCUCUACCc-----GUGUGGGGa----GCG- -5'
20693 5' -53.4 NC_004688.1 + 103543 0.67 0.91261
Target:  5'- -----gGAGAUuuugguaaGGGUGCGCUCUUCGCu -3'
miRNA:   3'- cuuuugCUCUA--------CCCGUGUGGGGAGCG- -5'
20693 5' -53.4 NC_004688.1 + 33547 0.67 0.899785
Target:  5'- ----cCGcAGGUGcGGCACACCUUgCGCg -3'
miRNA:   3'- cuuuuGC-UCUAC-CCGUGUGGGGaGCG- -5'
20693 5' -53.4 NC_004688.1 + 109779 0.67 0.892995
Target:  5'- ---cAUGGGAUGuGCAUAUCCCUgcCGCa -3'
miRNA:   3'- cuuuUGCUCUACcCGUGUGGGGA--GCG- -5'
20693 5' -53.4 NC_004688.1 + 108335 0.67 0.885959
Target:  5'- --uGGCGGuGGccaucUGGGCGCGCCUCUCa- -3'
miRNA:   3'- cuuUUGCU-CU-----ACCCGUGUGGGGAGcg -5'
20693 5' -53.4 NC_004688.1 + 18856 0.68 0.871164
Target:  5'- ---cACGAGGgcGGGCAUACCCagCUUGUc -3'
miRNA:   3'- cuuuUGCUCUa-CCCGUGUGGG--GAGCG- -5'
20693 5' -53.4 NC_004688.1 + 22410 0.68 0.846421
Target:  5'- ----uUGGGGUGGGCguagaaguaauccAgGCCCUUCGCc -3'
miRNA:   3'- cuuuuGCUCUACCCG-------------UgUGGGGAGCG- -5'
20693 5' -53.4 NC_004688.1 + 14517 0.69 0.812461
Target:  5'- -uGGugGAGAgguccagaagGGGCGCGCCaaCCUcCGCg -3'
miRNA:   3'- cuUUugCUCUa---------CCCGUGUGG--GGA-GCG- -5'
20693 5' -53.4 NC_004688.1 + 1109 0.69 0.803299
Target:  5'- uGAAGACGAGGUacuaGGGUACGCgCCaCGg -3'
miRNA:   3'- -CUUUUGCUCUA----CCCGUGUGgGGaGCg -5'
20693 5' -53.4 NC_004688.1 + 99877 0.69 0.803299
Target:  5'- aGGAAgcGCGAGGUGuGCACACgCUggaUCGCg -3'
miRNA:   3'- -CUUU--UGCUCUACcCGUGUGgGG---AGCG- -5'
20693 5' -53.4 NC_004688.1 + 53111 0.7 0.784483
Target:  5'- ---cACGuGGcuUGGcGC-CACCCCUCGCc -3'
miRNA:   3'- cuuuUGCuCU--ACC-CGuGUGGGGAGCG- -5'
20693 5' -53.4 NC_004688.1 + 79525 0.7 0.784483
Target:  5'- -----gGGGGUGGGguCACCCCa-GCg -3'
miRNA:   3'- cuuuugCUCUACCCguGUGGGGagCG- -5'
20693 5' -53.4 NC_004688.1 + 50023 0.7 0.745158
Target:  5'- -uGGACGAGGUGGGaCAUgauggcguaGCCCUggcCGCg -3'
miRNA:   3'- cuUUUGCUCUACCC-GUG---------UGGGGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.