miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20694 3' -54.5 NC_004688.1 + 104128 0.66 0.911255
Target:  5'- gACCGUGAAcCCGGCGgccucgaucUGAGGGa- -3'
miRNA:   3'- -UGGUAUUUuGGCCGCacc------ACUCCCcg -5'
20694 3' -54.5 NC_004688.1 + 79954 0.66 0.904964
Target:  5'- cGCCcgGAucGACCGGgGUcaccaccgGGUuGGGGGUg -3'
miRNA:   3'- -UGGuaUU--UUGGCCgCA--------CCAcUCCCCG- -5'
20694 3' -54.5 NC_004688.1 + 33438 0.66 0.89909
Target:  5'- aGCCGUAGuaguaggcuugcauCCgGGCGUcggGGUcGAGGGGUu -3'
miRNA:   3'- -UGGUAUUuu------------GG-CCGCA---CCA-CUCCCCG- -5'
20694 3' -54.5 NC_004688.1 + 10263 0.66 0.884612
Target:  5'- uGCUAcu--GCUGGCGcUGGcgcucaccgcccUGGGGGGCu -3'
miRNA:   3'- -UGGUauuuUGGCCGC-ACC------------ACUCCCCG- -5'
20694 3' -54.5 NC_004688.1 + 32563 0.67 0.862124
Target:  5'- gGCCc--GGACgGGCGUGGaGAGGGu- -3'
miRNA:   3'- -UGGuauUUUGgCCGCACCaCUCCCcg -5'
20694 3' -54.5 NC_004688.1 + 70109 0.67 0.84602
Target:  5'- aGCCAcAGGA-CGGUGccaucGGUgGAGGGGCg -3'
miRNA:   3'- -UGGUaUUUUgGCCGCa----CCA-CUCCCCG- -5'
20694 3' -54.5 NC_004688.1 + 27146 0.68 0.837655
Target:  5'- cCCAUGGccAAgUGGCGaUGGUGAccaGGGCa -3'
miRNA:   3'- uGGUAUU--UUgGCCGC-ACCACUc--CCCG- -5'
20694 3' -54.5 NC_004688.1 + 20757 0.68 0.811401
Target:  5'- cGCCcucccACCaGCG-GGUGAGGuGGCg -3'
miRNA:   3'- -UGGuauuuUGGcCGCaCCACUCC-CCG- -5'
20694 3' -54.5 NC_004688.1 + 105382 0.68 0.802292
Target:  5'- uCCAUGAucCCGGCGag--GAGGGcGCg -3'
miRNA:   3'- uGGUAUUuuGGCCGCaccaCUCCC-CG- -5'
20694 3' -54.5 NC_004688.1 + 82502 0.69 0.774021
Target:  5'- cGCCAgguGGCCGGacugGGUGAcGGuGGCg -3'
miRNA:   3'- -UGGUauuUUGGCCgca-CCACU-CC-CCG- -5'
20694 3' -54.5 NC_004688.1 + 79246 0.7 0.724343
Target:  5'- cGCCu-----CCccCGUGGUGGGGGGCg -3'
miRNA:   3'- -UGGuauuuuGGccGCACCACUCCCCG- -5'
20694 3' -54.5 NC_004688.1 + 83972 0.71 0.640982
Target:  5'- uGCCGUAuuugguAAUCGGCGUGGgagGAuagcucuccaaGGGGUc -3'
miRNA:   3'- -UGGUAUu-----UUGGCCGCACCa--CU-----------CCCCG- -5'
20694 3' -54.5 NC_004688.1 + 90838 0.74 0.496207
Target:  5'- uCCGgaacGAAGCCGGCGgGGaUGAugGGGGCg -3'
miRNA:   3'- uGGUa---UUUUGGCCGCaCC-ACU--CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.