miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20694 5' -60 NC_004688.1 + 44710 0.66 0.631456
Target:  5'- uGGCCCCUGUcgauauccaggGGCUUgGGCGaggUGCg-- -3'
miRNA:   3'- gCCGGGGACG-----------UUGGAgCCGC---ACGaac -5'
20694 5' -60 NC_004688.1 + 43053 0.67 0.594692
Target:  5'- uGGCCUcgcgcugcuccaucaCUGCGAgCUgGGCGUGUUg- -3'
miRNA:   3'- gCCGGG---------------GACGUUgGAgCCGCACGAac -5'
20694 5' -60 NC_004688.1 + 78598 0.67 0.590623
Target:  5'- aCGGCaCCagCUGCAACCgaaUCGGCGcGCc-- -3'
miRNA:   3'- -GCCG-GG--GACGUUGG---AGCCGCaCGaac -5'
20694 5' -60 NC_004688.1 + 25587 0.67 0.570358
Target:  5'- uCGGCCuCCcGCAGCCUgaUGGCG-GCc-- -3'
miRNA:   3'- -GCCGG-GGaCGUUGGA--GCCGCaCGaac -5'
20694 5' -60 NC_004688.1 + 52924 0.68 0.540303
Target:  5'- gCGGCCCggggGC-ACCUCGGgGcUGCUg- -3'
miRNA:   3'- -GCCGGGga--CGuUGGAGCCgC-ACGAac -5'
20694 5' -60 NC_004688.1 + 58026 0.68 0.520564
Target:  5'- uCGGCCCCguucaGGCC-CGGCGacuggcccaaUGCUUGc -3'
miRNA:   3'- -GCCGGGGacg--UUGGaGCCGC----------ACGAAC- -5'
20694 5' -60 NC_004688.1 + 93647 0.68 0.519584
Target:  5'- uCGGCCUC-GCGcucccagagcauuACUUCGGCGacgUGCUUGu -3'
miRNA:   3'- -GCCGGGGaCGU-------------UGGAGCCGC---ACGAAC- -5'
20694 5' -60 NC_004688.1 + 93226 0.69 0.47256
Target:  5'- uGGCCCauucggGCGAgCUCGGCG-GCa-- -3'
miRNA:   3'- gCCGGGga----CGUUgGAGCCGCaCGaac -5'
20694 5' -60 NC_004688.1 + 71907 0.69 0.453987
Target:  5'- aCGGCCCCgGCAACCcCGGagGUGaCg-- -3'
miRNA:   3'- -GCCGGGGaCGUUGGaGCCg-CAC-Gaac -5'
20694 5' -60 NC_004688.1 + 80612 0.71 0.343197
Target:  5'- aCGGCgCCUUGUuggugggcacaaaGACCUCGGCGUGg--- -3'
miRNA:   3'- -GCCG-GGGACG-------------UUGGAGCCGCACgaac -5'
20694 5' -60 NC_004688.1 + 59090 0.72 0.307068
Target:  5'- uCGGUugagCCCUGCGACgUUGGCgGUGCUg- -3'
miRNA:   3'- -GCCG----GGGACGUUGgAGCCG-CACGAac -5'
20694 5' -60 NC_004688.1 + 70990 0.72 0.304953
Target:  5'- uCGGCgCCUGCuccGCCggguccgguggcgcaGGCGUGCUUGu -3'
miRNA:   3'- -GCCGgGGACGu--UGGag-------------CCGCACGAAC- -5'
20694 5' -60 NC_004688.1 + 45178 0.72 0.300062
Target:  5'- cCGGCgCCUagcuUGCGGCCUCGGCGacgcGCUg- -3'
miRNA:   3'- -GCCG-GGG----ACGUUGGAGCCGCa---CGAac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.