Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20694 | 5' | -60 | NC_004688.1 | + | 45178 | 0.72 | 0.300062 |
Target: 5'- cCGGCgCCUagcuUGCGGCCUCGGCGacgcGCUg- -3' miRNA: 3'- -GCCG-GGG----ACGUUGGAGCCGCa---CGAac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 43053 | 0.67 | 0.594692 |
Target: 5'- uGGCCUcgcgcugcuccaucaCUGCGAgCUgGGCGUGUUg- -3' miRNA: 3'- gCCGGG---------------GACGUUgGAgCCGCACGAac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 78598 | 0.67 | 0.590623 |
Target: 5'- aCGGCaCCagCUGCAACCgaaUCGGCGcGCc-- -3' miRNA: 3'- -GCCG-GG--GACGUUGG---AGCCGCaCGaac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 25587 | 0.67 | 0.570358 |
Target: 5'- uCGGCCuCCcGCAGCCUgaUGGCG-GCc-- -3' miRNA: 3'- -GCCGG-GGaCGUUGGA--GCCGCaCGaac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 52924 | 0.68 | 0.540303 |
Target: 5'- gCGGCCCggggGC-ACCUCGGgGcUGCUg- -3' miRNA: 3'- -GCCGGGga--CGuUGGAGCCgC-ACGAac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 58026 | 0.68 | 0.520564 |
Target: 5'- uCGGCCCCguucaGGCC-CGGCGacuggcccaaUGCUUGc -3' miRNA: 3'- -GCCGGGGacg--UUGGaGCCGC----------ACGAAC- -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 93647 | 0.68 | 0.519584 |
Target: 5'- uCGGCCUC-GCGcucccagagcauuACUUCGGCGacgUGCUUGu -3' miRNA: 3'- -GCCGGGGaCGU-------------UGGAGCCGC---ACGAAC- -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 93226 | 0.69 | 0.47256 |
Target: 5'- uGGCCCauucggGCGAgCUCGGCG-GCa-- -3' miRNA: 3'- gCCGGGga----CGUUgGAGCCGCaCGaac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 71907 | 0.69 | 0.453987 |
Target: 5'- aCGGCCCCgGCAACCcCGGagGUGaCg-- -3' miRNA: 3'- -GCCGGGGaCGUUGGaGCCg-CAC-Gaac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 80612 | 0.71 | 0.343197 |
Target: 5'- aCGGCgCCUUGUuggugggcacaaaGACCUCGGCGUGg--- -3' miRNA: 3'- -GCCG-GGGACG-------------UUGGAGCCGCACgaac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 59090 | 0.72 | 0.307068 |
Target: 5'- uCGGUugagCCCUGCGACgUUGGCgGUGCUg- -3' miRNA: 3'- -GCCG----GGGACGUUGgAGCCG-CACGAac -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 70990 | 0.72 | 0.304953 |
Target: 5'- uCGGCgCCUGCuccGCCggguccgguggcgcaGGCGUGCUUGu -3' miRNA: 3'- -GCCGgGGACGu--UGGag-------------CCGCACGAAC- -5' |
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20694 | 5' | -60 | NC_004688.1 | + | 44710 | 0.66 | 0.631456 |
Target: 5'- uGGCCCCUGUcgauauccaggGGCUUgGGCGaggUGCg-- -3' miRNA: 3'- gCCGGGGACG-----------UUGGAgCCGC---ACGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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