Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20701 | 3' | -59.4 | NC_004688.1 | + | 79938 | 0.77 | 0.167081 |
Target: 5'- gACGGCaggccggGCCCGCCcGGaUCGACCGGGGu -3' miRNA: 3'- -UGCCG-------UGGGCGGaCC-AGUUGGCCUUu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 56548 | 0.74 | 0.261369 |
Target: 5'- aGCGGUACUCGCCguUGGUgaugugcccgcggCGGCCGGGGAa -3' miRNA: 3'- -UGCCGUGGGCGG--ACCA-------------GUUGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 110593 | 0.73 | 0.301986 |
Target: 5'- gGCGGC-CCCGCCccGGUUu-CCGGGGAa -3' miRNA: 3'- -UGCCGuGGGCGGa-CCAGuuGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 75523 | 0.72 | 0.344959 |
Target: 5'- gGCGGCACCgGCCaguuuUGGUCAuucguaaucguuCCGGGGu -3' miRNA: 3'- -UGCCGUGGgCGG-----ACCAGUu-----------GGCCUUu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 61126 | 0.71 | 0.387079 |
Target: 5'- gAUGGCGcaagaaggacCCCGUCUGGcggCGGCCGGAu- -3' miRNA: 3'- -UGCCGU----------GGGCGGACCa--GUUGGCCUuu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 50057 | 0.7 | 0.439699 |
Target: 5'- cGCGGCGgUCGCCaaUGGUCcaggccccGCCGGGGAu -3' miRNA: 3'- -UGCCGUgGGCGG--ACCAGu-------UGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 57947 | 0.69 | 0.486515 |
Target: 5'- cGCGuGCGCCUGCUUGaagagaaGACCGGAAAg -3' miRNA: 3'- -UGC-CGUGGGCGGACcag----UUGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 87692 | 0.69 | 0.486515 |
Target: 5'- aGCGcCGCCUGCUgGG-CGGCCGGAGAg -3' miRNA: 3'- -UGCcGUGGGCGGaCCaGUUGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 102113 | 0.68 | 0.515711 |
Target: 5'- -gGGUGCCCGCgUGGUUcACCaGAAGa -3' miRNA: 3'- ugCCGUGGGCGgACCAGuUGGcCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 23365 | 0.68 | 0.535563 |
Target: 5'- cACaGCuucCCCGCCUGGUCGuACCGa--- -3' miRNA: 3'- -UGcCGu--GGGCGGACCAGU-UGGCcuuu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 99668 | 0.68 | 0.555675 |
Target: 5'- cCGGUGCCCaGCgUGGUCGGCaGGGu- -3' miRNA: 3'- uGCCGUGGG-CGgACCAGUUGgCCUuu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 29530 | 0.67 | 0.596491 |
Target: 5'- gGCGGgaGCCUugGCCUGGUacuugaacACCGGAAAg -3' miRNA: 3'- -UGCCg-UGGG--CGGACCAgu------UGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 104361 | 0.67 | 0.627406 |
Target: 5'- cGCGaGCGCCgGCgaGGUCuggGCUGGGGu -3' miRNA: 3'- -UGC-CGUGGgCGgaCCAGu--UGGCCUUu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 62624 | 0.66 | 0.637728 |
Target: 5'- gGCGGCGaCCGCUcGGUCcACCuGGAc- -3' miRNA: 3'- -UGCCGUgGGCGGaCCAGuUGG-CCUuu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 79995 | 0.66 | 0.648046 |
Target: 5'- aGCGGa--UCGUCcgGGUCGACCGGGGu -3' miRNA: 3'- -UGCCgugGGCGGa-CCAGUUGGCCUUu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 34926 | 0.66 | 0.658352 |
Target: 5'- cCGGCGCUucuCGCCUGGcaCGAgUGGGAAg -3' miRNA: 3'- uGCCGUGG---GCGGACCa-GUUgGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 95655 | 0.66 | 0.664525 |
Target: 5'- aACGGCGCCgCGCCgcggcacaugaaaGGUguccagggCAACUGGAAc -3' miRNA: 3'- -UGCCGUGG-GCGGa------------CCA--------GUUGGCCUUu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 97017 | 0.66 | 0.667608 |
Target: 5'- -aGGCGCCCauCCgUGGUgaaggaaUAGCCGGAGAg -3' miRNA: 3'- ugCCGUGGGc-GG-ACCA-------GUUGGCCUUU- -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 54821 | 0.66 | 0.678889 |
Target: 5'- cUGGCGCUCGCggGG-CGugCGGAAu -3' miRNA: 3'- uGCCGUGGGCGgaCCaGUugGCCUUu -5' |
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20701 | 3' | -59.4 | NC_004688.1 | + | 51567 | 0.66 | 0.678889 |
Target: 5'- gAUGGC-CgCCGCC-GGcuaCGGCCGGAAAg -3' miRNA: 3'- -UGCCGuG-GGCGGaCCa--GUUGGCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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